Full-length genome sequences of the first H9N2 avian influenza viruses isolated in the Northeast of Algeria

Barberis, Abdelheq; Boudaoud, Amine; Gorrill, Angelina; Loupias, Josianne; Ghram, Abdeljelil; Lachheb, Jihene; Alloui, Nadir; Ducatez, Mariette F.

doi:10.1186/s12985-020-01377-z

Virology Journal

Table 2 Nucleotide sequence comparison between the genes segments of the studied Algerian H9N2 strains and selective isolates (percent identity, %)

From: Full-length genome sequences of the first H9N2 avian influenza viruses isolated in the Northeast of Algeria

Algerian strains	Genes	References strains					Contemporary Algerian’s strains		Strains from neighboring country				UAE
Algerian strains	Genes	HK-G1	HK-Y280	HK-Y439	CK-Bei	HK-G9	Alg-216	Alg-225	Morocco-SF1	Morocco-SF5	Tun-12	Tin-51	Dubai-D2506.A
19BDD	PB2	86.77	84.75	85.79	84.89	88.18	98.90	98.95	99.12	99.08	93.16	93.16	98.59
	PB1	88.13	87.06	88.54	88.60	88.10	99.08	99.08	99.47	99.52	94.17	94.17	98.33
	PA	88.76	87.14	91.80	87.65	86.81	99.30	99.35	99.35	99.44	94.61	94.61	98.74
	HA	89.14	86.64	81.75	87.57	87.35	98.92	98.80	99.16	98.92	92.53	92.53	98.62
	NP	94.33	87.50	91.10	87.81	88.43	99.13	99.27	99.20	99.13	95.32	95.32	97.86
	NA	89.68	87.49	84.08	89.05	87.46	98.37	98.37	99.22	99.36	92.20	92.35	98.44
	M	94.16	92.86	89.50	93.02	93.24	98.79	98.79	99.39	99.28	96.23	96.23	98.35
	NS	88.70	88.94	91.47	89.54	89.23	99.41	99.41	99.05	99.28	95.15	95.15	98.58
9BDD	PB2	86.82	84.75	85.79	84.89	87.37	98.95	98.99	99.16	99.12	93.20	93.20	98.63
	PB 1	88.04	87.97	88.45	88.51	88.10	99.08	99.08	99.47	99.52	94.17	94.17	98.33
	PA	88.76	87.14	91.80	87.65	86.81	99.30	99.35	99.35	99.44	94.61	94.61	98.74
	HA	89.14	86.64	81.75	87.57	87.35	98.92	98.80	99.16	98.92	92.53	92.53	98.62
	NP	94.33	87.50	91.10	87.81	88.43	99.13	99.27	99.20	99.13	95.32	95.32	97.86
	NA	89.68	87.49	84.08	89.05	87.46	98.37	98.37	99.22	99.36	92.20	92.35	98.44
	M	94.16	92.87	89.51	93.02	93.35	98.89	98.89	99.39	99.28	96.23	96.23	98.35
	NS	88.70	88.94	91.47	89.54	89.23	99.41	99.41	99.05	99.28	95.15	95.15	98.58
6BDD	PB2	87.04	85.06	86.10	85.20	87.59	99.04	99.08	99.25	99.21	93.29	93.29	98.68
	PB 1	88.13	88.06	88.54	88.60	88.18	98.81	98.81	99.21	99.25	93.94	93.94	98.07
	PA	88.39	86.82	91.52	87.32	86.49	98.88	98.93	98.93	99.02	94.19	94.19	98.33
	HA	89.15	86.71	82.07	87.70	87.40	98.50	98.38	98.86	98.62	92.30	92.29	98.32
	NP	94.19	87.50	90.98	87.74	88.31	99.13	99.26	99.20	99.13	95.12	95.12	97.86
	NA	89.46	87.14	83.94	88.77	87.31	98.23	98.23	99.08	99.22	92.06	92.20	98.30
	M	94.16	92.67	89.61	92.81	93.25	98.99	98.99	99.59	99.49	96.44	96.44	98.55
	NS	88.46	88.70	91.47	89.30	88.99	99.17	99.17	98.81	99.04	94.91	94.91	98.34

HK-G1: A/Quail/Hong Kong/G1/97. HK-Y280: A/Duck/Hong Kong/Y280/97. HK-Y439: A/duck/Hong Kong/Y439/97. CK-Bei: A/Chicken/ Beijing/1/94. HK-G9: A/Chicken/Hong Kong/G9/1997. Alg-216: A/Chicken/Algeria/216/2017. Alg-225: A/Chicken/Algeria/225/2017. Morocco-SF1: A/Chicken/Morocco/SF1/2016. Morocco-SF5: A/Chicken/Morocco/SF5/2016. Tun-12: A/Chicken/Tunisia/12/2010. Tun-51: A/MigratoryBird/Tunisia/51/2010. UAE: United Arab Emirates. Dubai-D2506.A: A/Chicken/Dubai/D2506.A/2015

Back to article page

ISSN: 1743-422X

Contact us

Submission enquiries: journalsubmissions@springernature.com