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Table 2 The US12 TRS and TRF in HSVs

From: Novel transcription regulatory sequences and factors of the immune evasion protein ICP47 (US12) of herpes simplex viruses

HSV strain Matrix identifier Position strand Core match Matrix match Sequence Factor name
HSV-1 strain XLMW V$CREL_01 37 (+) 1.000 0.982 gggtcTTTCC c-Rel
V$HNF4_01 1020 (−) 0.883 0.898 ccctgtcCTTTTtcccacc HNF-4
V$ELK1_02 1875(+) 1.000 0.984 ggcgcCGGAAgccc Elk-1
V$PAX4_01 2029 (−) 0.888 0.833 gccacgggccgCTTCAcggcc Pax-4
HSV-1 strain 17 V$CREL_01 37 (+) 1.000 0.982 gggtcTTTCC c-Rel
V$HNF4_01 1023 (−) 0.883 0.898 ccctgtcCTTTTtcccacc HNF-4
V$PAX4_01 2032 (−) 0.888 0.833 gccacgggccgCTTCAcggcc Pax-4
HSV-2 strain SD90e V$HNF4_01 746 (−) 1.000 0.928 gctcgcaCTTTGccctaat HNF-4
I$CF2II_01 767 (−) 1.000 1.000 tatATATAc CF2-II
V$HNF4_01 886 (−) 1.000 0.928 gctcgcaCTTTGccctaat HNF-4
I$CF2II_01 907 (−) 1.000 1.000 tatATATAc CF2-II
I$E74A_01 1076(+) 1.000 0.954 cgaaccCGGAAgggcag E74A
V$OCT1_Q6 1120 (−) 0.883 0.911 ctcaTTAGCatcgcg Oct-1
F$STUAP_01 1637 (−) 1.000 1.000 ggtCGCGAtg StuAp