Table 2 The US12 TRS and TRF in HSVs
HSV strain | Matrix identifier | Position strand | Core match | Matrix match | Sequence | Factor name |
|---|---|---|---|---|---|---|
HSV-1 strain XLMW | V$CREL_01 | 37 (+) | 1.000 | 0.982 | gggtcTTTCC | c-Rel |
V$HNF4_01 | 1020 (−) | 0.883 | 0.898 | ccctgtcCTTTTtcccacc | HNF-4 | |
V$ELK1_02 | 1875(+) | 1.000 | 0.984 | ggcgcCGGAAgccc | Elk-1 | |
V$PAX4_01 | 2029 (−) | 0.888 | 0.833 | gccacgggccgCTTCAcggcc | Pax-4 | |
HSV-1 strain 17 | V$CREL_01 | 37 (+) | 1.000 | 0.982 | gggtcTTTCC | c-Rel |
V$HNF4_01 | 1023 (−) | 0.883 | 0.898 | ccctgtcCTTTTtcccacc | HNF-4 | |
V$PAX4_01 | 2032 (−) | 0.888 | 0.833 | gccacgggccgCTTCAcggcc | Pax-4 | |
HSV-2 strain SD90e | V$HNF4_01 | 746 (−) | 1.000 | 0.928 | gctcgcaCTTTGccctaat | HNF-4 |
I$CF2II_01 | 767 (−) | 1.000 | 1.000 | tatATATAc | CF2-II | |
V$HNF4_01 | 886 (−) | 1.000 | 0.928 | gctcgcaCTTTGccctaat | HNF-4 | |
I$CF2II_01 | 907 (−) | 1.000 | 1.000 | tatATATAc | CF2-II | |
I$E74A_01 | 1076(+) | 1.000 | 0.954 | cgaaccCGGAAgggcag | E74A | |
V$OCT1_Q6 | 1120 (−) | 0.883 | 0.911 | ctcaTTAGCatcgcg | Oct-1 | |
F$STUAP_01 | 1637 (−) | 1.000 | 1.000 | ggtCGCGAtg | StuAp |