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Table 5 Splice donor and acceptor sites in the early and late regions of the novel polyomaviruses

From: Search for polyoma-, herpes-, and bornaviruses in squirrels of the family Sciuridae

Polyomavirus

CDSa

Splice donor site EXON|intronb

Splice acceptor site

intron|EXONb

Sciurus carolinensis polyomavirus 1

STAg

AAG|gttagt (94)

atggaactgcag|CA (80)

LTAg

GAG|gtgaga (95)

cctcttaataag|AT (73)

VP2

CAG|gtgagg (96)

attctcttgtag|GA (85)

Callosciurus prevostii polyomavirus 1

STAg

ATG|gtgagt (93)

tacctttaacag|AT (85)

LTAg

GAG|gtaaaa (83)

tacctttaacag|AT (85)

VP2

GAG|gtaaga (96)

ttccttttgtag|GA (87)

Callosciurus erythraeus polyomavirus 1

LTAg

GAG|gtacgt (89)

tgcttctttcag|GA (93)

  1. aCDS coding sequence
  2. bscore (0–100; in brackets) of similarity to the splice consensus site generated by the Human Splicing Finder 3.1