From: A novel avian isolate of hepatitis E virus from Pakistan
Fragment | Primer ID | Sequence (5′-3′) | GC% | Nucleotide Positiona | Fragment size (bp) | Reference |
---|---|---|---|---|---|---|
MeT | aHCGF | GCATGACCCCATGCCAGGGTAAG | 61 | 1–23 | 849 | This study |
F1R | CGGCATGGGGCAGGGCTGGGT | 76 | 849–829 | |||
Hel | RPHF | TGGCGCACYGTWTCYCACCG | 60 | 2791–2810 | 186 | [16] |
RPHR | CCTCRTGGACCGTWATCGACCC | 59 | 2956–2977 | |||
ORF2 | RPO2F | GGTATGGTTGATTTTGCCATAAAG | 38 | 5433–5456 | 280 | [16] |
RPO2R | GCTGCNCGNARCAGTGTCGA | 55 | 5694–5713 | |||
ORF2 | F9F | AATGGTAGCTCCGTGGTTTGGTATGC | 50 | 6273–6298 | 385 | This study |
aHCGR | ACTATGCCCGAGATGGGAGG | 60 | 6658–6639 | |||
ORF123 junction & complete ORF3 | APO31S | ACCATCCAGCTTGTGGCGG | 63 | 4480–4499 | 902 | This study |
APO31A | CACAAACCATGAGCATGCCGGACG | 58 | 5382–5359 |