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Table 1 Primers used in this study

From: A novel avian isolate of hepatitis E virus from Pakistan

Fragment

Primer ID

Sequence (5′-3′)

GC%

Nucleotide Positiona

Fragment size (bp)

Reference

MeT

aHCGF

GCATGACCCCATGCCAGGGTAAG

61

1–23

849

This study

F1R

CGGCATGGGGCAGGGCTGGGT

76

849–829

Hel

RPHF

TGGCGCACYGTWTCYCACCG

60

2791–2810

186

[16]

RPHR

CCTCRTGGACCGTWATCGACCC

59

2956–2977

ORF2

RPO2F

GGTATGGTTGATTTTGCCATAAAG

38

5433–5456

280

[16]

RPO2R

GCTGCNCGNARCAGTGTCGA

55

5694–5713

ORF2

F9F

AATGGTAGCTCCGTGGTTTGGTATGC

50

6273–6298

385

This study

aHCGR

ACTATGCCCGAGATGGGAGG

60

6658–6639

ORF123 junction & complete

ORF3

APO31S

ACCATCCAGCTTGTGGCGG

63

4480–4499

902

This study

APO31A

CACAAACCATGAGCATGCCGGACG

58

5382–5359

  1. anucleotide positions using reference sequence AM943646