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Table 6 RSCU distances of the host pairs calculated from the RSCU values for the abundant codons (RSCU ≥1.6) in the LT-Ag genes and two domains of PyVs

From: Codon usage patterns of LT-Ag genes in polyomaviruses from different host species

RegionHost pairsRSCU distances witin host pairs for abundant codons (RSCU≥1.6)
TTTTTAATTTCTCCTACTGCTAGAAGGAvg.
LT-AgA–F0.0820.165b0.4060.6760.1340.2440.1110.5210.7800.346
A–H0.558a1.593a0.5220.680a0.3010.764a0.5072.855a0.7490.948
A–M0.4351.1690.5120.3340.2570.4710.2042.3550.6450.709
A–P0.4601.3350.572a0.6010.385a0.7070.2792.7310.785a0.873
F–H0.4771.4280.1170.004b0.1670.5200.618a2.3350.0320.633
F–M0.3531.0040.1070.3420.1230.2270.3151.8340.1350.493
F–P0.3781.1700.1660.0740.2510.4630.3892.2100.005b0.567
H–M0.1230.4240.010b0.3460.044b0.2930.3030.5010.1040.239
H–P0.0980.2590.0500.0790.0830.057b0.2280.125b0.0360.113
M–P0.025b0.1660.0600.2670.1270.2360.075b0.3760.1400.164
DnaJA–H1.682a1.0640.224b1.896a0.5421.5800.3953.157a0.1511.188
A–M0.5110.6620.5611.5660.6691.668a0.6512.8740.012b1.019
A–P1.4761.230a0.788a1.6641.304a1.2120.786a2.4470.4491.262
H–M1.1710.4020.3380.3300.127b0.088b0.2560.283b0.1390.348
H–P0.207b0.166b0.5640.2320.7620.3680.3910.7110.600a0.444
M–P0.9650.5680.2260.098b0.6350.4560.135b0.4270.4610.441
HelicaseA–F0.1420.4940.4890.6330.6530.003b0.1680.1280.7160.381
A–H0.4161.739a0.4920.4350.106b0.9460.735a2.628a1.044a0.949
A–M0.3861.0740.647a0.0590.1840.8370.053b2.0520.7370.670
A–P0.3631.3490.5940.0490.4451.0130.5992.5020.9490.873
F–H0.558a1.2450.002b1.069a0.5460.9490.5682.5000.3280.863
F–M0.5280.5800.1580.5740.8360.8400.1151.9240.021b0.620
F–P0.5050.8540.1040.5851.098a1.016a0.4312.3740.2320.800
H–M0.0290.6650.1550.4950.2900.1100.6820.5760.3070.368
H–P0.0530.3900.1020.4840.5520.0660.1360.126b0.0960.223
M–P0.024b0.274b0.0530.011b0.2620.1760.5460.4500.2120.223
  1. A–F avian–fish, A–H avian–human, A–M avian–non-primate mammals, A–P avian–non-human primate, F–H fish–human, F–M fish–non-primate mammals, F–P fish–non-human primate, H–M human–non-primate mammals, H–P human–non-human primate, M–P non-primate mammals–non-human primate; alargest RSCU distances among the host pairs for the corresponding codon; bsmallest RSCU distances among the host pairs for the corresponding codon