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Table 2 Predicted recombination events in GLRaV-4 strainsa

From: Intra-species recombination among strains of the ampelovirus Grapevine leafroll-associated virus 4

 Predicted Recombinant isolate

Recombination Event*

Predicted breakpoint positions in recombinant

Putative Parental Isolates**

Detection method***

Begin

End

Minor Parent

Major Parent

RDP

GENE CONV

Bootscan

Maxchi

Chimaera

SiSscan

LARD

3Seq

St 4_LR106

event-1

4105

5240

St 5_WASB-5

St 4_WAMR-4

5.2 × 10−265

1.4 × 10− 236

3.8 × 10− 251

2.9 × 10−50

2.7 × 10−47

5.1 × 10−50

3.3 × 10− 316

2.4 × 10−13

St 6_Estellat

         

St 5_TRAJ1-BR

         

St 4_LR106

event-2

627

1551

St Pr

St 4_WAMR-4

2.0 × 10− 228

5.4 × 10− 173

6.3 × 10−218

1.2 × 10−41

4.4 × 10−07

2.4 × 10−43

3.3 × 10− 316

2.7 × 10− 13

St 6_Estellat

event-3

13,807

6312

St 5_3138–03

Unknown (St 9_Man086)

1.7 × 10− 109

1.1 × 10−88

9.9 × 10− 112

1.3 × 10−59

4.2 × 10−03

4.3 × 10−98

2.4 × 10− 243

1.2 × 10− 13

St 5_TRAJ1-BR

Unknown (St 9_WALA-9)

        

WASB-5

         
  1. aRecombinant and parental isolates and nucleotide position of breakpoints in recombinant isolates LR106 and Estellat are listed. The source of isolates of different GLRaV-4 strains are listed in Table 1. The recombination detection program software package (31) used for the detection of putative recombination events and the corresponding average P-values for each event are shown. *See Fig. 1 for details. ** Minor and major parents are the isolates predicted to contribute smaller and larger sequence fragments, respectively. ***Detection methods are cited in reference [31]
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