Skip to main content

Table 2 Distribution of small RNA sequences among the two constructed libraries

From: Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

  Mock TbCSV/TbCSB
Total sRNA reads (percent %) Unique sRNA reads (percent %) Total sRNA reads (percent %) Unique sRNA reads (percent %)
Total 12,671,385 (100%) 4,241,949 (100%) 10,080,639 (100%) 3,745,058 (100%)
Exon sense 470,589 (3.71%) 170,880 (4.03%) 369,364 (3.66%) 119,349 (3.19%)
Exon antisense 567,077 (4.48%) 44,166 (1.04%) 387,710 (3.85%) 44,418 (1.19%)
Intron sense 1,057,103 (8.34%) 363,908 (8.58%) 975,273 (9.67%) 349,541 (9.33%)
Intron antisense 675,481 (5.33%) 198,623 (4.68%) 505,824 (5.02%) 179,369 (4.79%)
miRNA 408,746 (3.22%) 1501 (0.04%) 404,032 (4.01%) 1488 (0.04%)
rRNA 638,241 (5.04%) 31,900 (0.75%) 443,250 (4.4%) 27,223 (0.73%)
tRNA 1 (0%) 1 (0%) 1 (0%) 1 (0%)
snRNA 3576 (0.03%) 841 (0.02%) 3584 (0.04%) 1054 (0.03%)
snoRNA 26,219 (0.21%) 1688 (0.04%) 17,338 (0.17%) 1678 (0.04%)
Repeat 3,991,675 (31.5%) 801,555 (18.9%) 2,985,768 (29.62%) 741,474 (19.8%)
NAT 297,399 (2.35%) 9280 (0.22%) 186,878 (1.85%) 7343 (0.2%)
TAS 15,340 (0.12%) 688 (0.02%) 15,305 (0.15%) 704 (0.02%)
Unannotated 4,519,938 (35.67%) 2,616,918 (61.69%) 3,786,312 (37.56%) 2,271,416 (60.65%)