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Table 4 Virus detection from oropharyngeal and cloacal swabs of the experimentally infected chickens by real-time PCR and virus isolation

From: Development of a duplex TaqMan real-time RT-PCR assay for simultaneous detection of newly emerged H5N6 influenza viruses

  Control Infected group 1 with 3 EID50 Infected group 2 with 30 EID50
  H5 N6 H5 N6 H5 N6
Oropharyngeal Swabs undet undet 27.18 23.15 25.41 22.27
undet undet 25.16 22.33 27.63 24.1
undet undet 22.89 19.59 23.28 20.33
undet undet 32.32 29.39 27.02 22.2
undet undet 31.25 32.11 28.63 25.08
Cloacal Swabs undet undet 28.52 21.93 23.71 20.28
undet undet 22.83 19.13 27.05 23.86
undet undet 25.86 21.87 27.65 24.03
undet undet 32.21 33.95 25.9 21.34
undet undet 31.43 27.94 24.51 20.8