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Table 1 Primers and probes used for the assay

From: Development of a duplex TaqMan real-time RT-PCR assay for simultaneous detection of newly emerged H5N6 influenza viruses

Name

Sequences(5′-3′)

H5A-F

AGG GAG GAT GGC AGG GAA TG

H5A-R

TCT TTG TCT GCA GCG TAC CCA CT

H5A-P

FAM- ATG GTT GGT ATG GGT ACC ACC ATA GCA ATG -BHQ1

H5B-F

TCC TTG CAA CAG GAC TAA G

H5B-R

GTC TAC CAT TCC ATG CCA

H5B-P

FAM- AAG AAR AAA RAG AGG ACT RTT TGG AGC T-BHQ1

H5C-F

ATA CCA GGG AAC GCC CTC M

H5C-R

ATT ATT GTA GCT TAT CTT TAT TGT Y

H5C-P

FAM- TCG TTC TTT TTG ATG AGC CAT ACC ACA-BHQ1

N6A-F

TGC AGG ATG TTT GCT CTG AGT C

N6A-R

CGA AAT GGG CTC CTA TCA TGT AT

N6A-P

VIC- ACA ACA CTC AGA GGG CAA CAT GCG AAT -BHQ1

N6B-F

ACC GAC ACA AGT CGT CCT AAT GA

N6B-R

ACC CTT TTA CCC CTG GGT CTG

N6B-P

VIC - ATG GGA ACT GCG ATG CGC CAA TAA C-BHQ1

N6C-F

AAG GTC CCA AAT GCA GAA ACC

N6C-R

CCC TGA GTA CCC TGA CCA ATT TT

N6C-P

VIC -ACA CTC AAT CAG GGC CAA CCT CAT ACC A-BHQ1

N6D-F

CAG GGG TAA AAG GGT TTG CAT

N6D-R

TGC ATT TGG GAC CTT TAA CAT TTC

N6D-P

VIC - ACA CTC AAT CAG GGC CAA CCT CAT ACC A-BHQ1

H5-200F

AAT ACC CCT CAG AGA GAG AGA AG

H5-200R

ATC GAG TTG ACC TTA TTG GTG

N6-267F

GGC ACA TTC TAT CGA AAG ACA ATG C

N6-267R

CAT GGC ATG ACG TGC TTG AC A