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Table 1 Primers used for complete genome sequencing of D51 strain

From: A novel method to rescue and culture duck Astrovirus type 1 in vitro

Primer

Sequence

Localization (in the polyprotein gene)

Fragment length (bp)

1F

CCGAA(G/A)TGGGCGAGTC

1–918

919

1R

CCAGGTGTCAACAATCATGC

2F

GATGTTTATGGTGAGTTGTACAC(A/T)G

806–1786

972

2R

GCTAGATGGTATTATGCCTCTTG

3F

TTGCAGCTCACTCTGGCATA

1567–2231

666

3R

TGATGTCACTCCCTGTGAA(G/C)C

4F

CTCGCGAAAGAAGTTAAGAGTG

2021–2989

971

4R

CCTTCTTCATCGATGTCATTATCC

5F

CAGAGAATGCTTGATGAAGG(C/T)

2879–4177

1297

5R

TT(T/A)GGATACGCTGGTGTTGA

6F

CTTGGACTGTGGAAGCATATACC

3977–4740

763

6R

GTTGAAAACTGCCCTGAAGG

7F

GTTACCAACTGGAGAAGTCTGTCA

4680–5582

903

7R

TCCAAGTGTGACCACTGTTGTC

8F

GACAACAGTGGTCACACTTGGA

5561–6619

1082

8R

CCATGTGTGGTGTATATTGTGAT(G/A)

9F

GAGGTGTTCTGGGCAGTTTCAA

6291–7403

1113

9R

CTCCATCATCATCCTCTCACACTG

10F

AGTGTGAGAGGATGATGATGGA

7381–7620

240

10R

TGTGACCCACATGGTGATTTC

3′ Race

P1

AGTGTGAGAGGATGATGATGGA

7381–7751

371

Race1

GACTCGAGTCGACATCGA(T)18

P2

ACAGCTGCACTTTCTCATGC

7516–7751

236

Race2

GACTCGAGTCGACATCGA