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Table 1 Characteristics and pairwise nucleotide (nt) and amino acid (aa) alignments of the different regions of caraway yellows virus (CawYV) and selected members of subgroup C of the genus Nepovirus i.e., blueberry latent spherical virus (BLSV), blackcurrant reversion virus (BCRV), cherry leaf roll virus (CLRV), grapevine Bulgarian latent virus (GBLV), peach rosette mosaic virus (PRMV), soybean latent spherical virus (SLSV) and tomato ringspot virus (ToRSV)

From: Caraway yellows virus, a novel nepovirus from Carum carvi

Virus CawYV PRMV BLSV SLSV BCRV GBLV ToRSV CLRV
nt length RNA 1 Accession no. MK492273 NC_034214 NC_038764 NC_032270 NC_003509 NC_015492 NC_003840 NC_015414
Complete /−poly(A) 8026 8014 7960 8170 7711 7452 8214 7918
5′UTR 91 41 61 13 66 87 77 11
ORF 6642 6504 6519 6588 6285 6288 6594 6339
3′UTR 1293 1469 1380 1569 1360 1077 1543 1568
RNA 2 Accession no. MK492274 NC_034215 NC_038763 NC_032271 NC_003502 NC_015493 NC_003839 NC_015415
Complete /−poly(A) 6405 5956 6344 5776 6405 5821 7271 6360
5′UTR 94 47 55 23 161 189 75 11
ORF 5022 4425 4896 4197 4881 4500 5649 4770
3′UTR 1289 1484 1393 1556 1363 1132 1547 1579
Pairwise identity %
nt % RNA 1 Complete /−poly(A)   63 60.8 49.6 38.5 37 36 33.8
5′UTR 56.1 55.7 30.8 40.9 31.6 52 63.6
ORF 66.1 62.4 53.5 40.4 39.2 36.7 36.3
3′UTR 51.4 53.8 34 40.5 36.5 27 30.9
RNA 2 Complete /−poly(A) 41.3 41.5 37.7 35.9 30.9 38.6 35.6
5′UTR 37.2 30.9 34.8 35.9 36.2 41.3 63.6
ORF 39.9 38.5 39 37 31.8 40.9 37.7
3′UTR 51 55.2 33.4 36.1 37.1 29.4 30.6
aa % RNA 1 ORF 68.1 62.5 48.1 24.5 22.8 23.1 22.6
X1 27.9 29.7 22.9 12.2 10.6 10.8 10.8
X2 Pro-cof 52.9 53.2 33.9 25.8 21.4 15.6 18.5
Hel 82.5 75.6 59.3 28 24.1 22.6 23.2
VPg 75 57.6 56.2 6.1 27.3 25.9 37.9
Pro 79 66.8 51.3 27.6 23.5 24.7 23.1
RdRp 75.5 68.6 53.9 33.8 33.6 33.7 30.9
Pro-Pol 80.1 70.2 54.9 7.1 35.3 36.5 34.6
RNA 2 ORF 22.9 20.1 19 13.1 12.2 22.3 19
HP 23.3 13.1 6.5 7.3 7.6 8.2 7
MP 10 8.4 7.5 8.5 4.1 52.2 54.6
CP 36.5 34.7 39.6 24.3 24.8 26.1 20