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Table 4 Non-synonymous and synonymous substitution in ORFs of S5, S7 and S9

From: Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs

 

ORFs

dN

dS

dN/ dS

 

ORFs

dN

dS

dN/ dS

RBSDV

ORF5–1

0.013 ± 0.002

0.105 ± 0.008

0.124

SRBSDV

ORF5–1

0.006 ± 0.001

0.021 ± 0.003

0.286

ORF5–2

0.015 ± 0.004

0.053 ± 0.012

0.283

ORF5–2

0.005 ± 0.002

0.012 ± 0.006

0.417

ORF7–1

0.002 ± 0.001

0.071 ± 0.009

0.028

ORF7–1

0.001 ± 0.001

0.009 ± 0.004

0.111

ORF7–2

0.010 ± 0.002

0.089 ± 0.013

0.112

ORF7–2

0.001 ± 0.001

0.012 ± 0.006

0.083

ORF9–1

0.033 ± 0.004

0.259 ± 0.028

0.127

ORF9–1

0.008 ± 0.002

0.014 ± 0.003

0.571

ORF9–2

0.032 ± 0.012

0.348 ± 0.101

0.092

ORF9–2

0.090 ± 0.011

0.193 ± 0.049

0.466

Maize

ORF5–1

0.002 ± 0.001

0.025 ± 0.006

0.08

Rice

ORF5–1

0.605 ± 0.067

1.039 ± 0.135

0.582

ORF5–2

0.004 ± 0.003

0.028 ± 0.015

0.143

ORF5–2

1.289 ± 0.391

1.363 ± 0.362

0.946

ORF7–1

0.001 ± 0.001

0.023 ± 0.007

0.043

ORF7–1

0.085 ± 0.012

0.772 ± 0.140

0.110

ORF7–2

0.003 ± 0.002

0.003 ± 0.011

1.0

ORF7–2

0.168 ± 0.055

0.994 ± 0.316

0.169

ORF9–1

0.101 ± 0.010

0.763 ± 0.113

0.132

ORF9–1

0.091 ± 0.010

0.683 ± 0093

0.133

ORF9–2

0.102 ± 0.046

1.081 ± 0.394

0.094

ORF9–2

0.122 ± 0.030

0.980 ± 0.280

0.124