Table 1 Predicted protease cleavage sites of the DHAV polyprotein
From: Biochemical characterization of recombinant Avihepatovirus 3C protease and its localization
Protein | aa position | Length | Cleavage site | GC content | Cleavage type |
|---|---|---|---|---|---|
1AB/VP0 | 1–256 | 256 aa | PFDNQ/GKRKP | 40% | 3Cpro |
1C/VP3 | 257–493 | 237 aa | ATNNQ/GDTNQ | 43.33% | 3Cpro |
1D/VP1 | 494–731 | 238 aa | DLEIE/SDQIR | 33.33% | 3Cpro |
2A1 | 732–751 | 20 aa | EPNPG/PILVV | 46.47% | ribosome skipping site |
2A2 | 752–912 | 161 aa | PEFVS/HLPRL | 43.33% | 3Cpro |
2A3 | 913–1036 | 124 aa | ITTDQ/SFPGK | 36.67% | 3Cpro |
2B | 1037–1155 | 119 aa | MLEDQ/SGKTT | 43.33% | 3Cpro |
2C | 1156–1488 | 333 aa | SFMNQ/SKVRR | 46.67% | 3Cpro |
3A | 1489–1581 | 93 aa | RRFAQ/SIYSQ | 40% | 3Cpro |
3B | 1582–1613 | 32 aa | TGLDQ/SGRVN | 53.33% | 3Cpro |
3C | 1614–1794 | 181 aa | PVFNQ/GKVVS | 40% | 3Cpro |
3D | 1795–2247 | 453 aa |  |  |  |