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Table 4 Genome sizes, GC content, and gene and protein sequence identities of TbelPyV1 and other related PyVs

From: Detection and genome characterization of two novel papillomaviruses and a novel polyomavirus in tree shrew (Tupaia belangeri chinensis) in China

Polyomaviruses GenBank numbers Genome size(nt) G + C content (%) Nucleotide and amino acid sequence pairwise identities(nt/aa, %)
Large T antigen Small T antigen VP1 VP2
Alphapolyomavirus
TbelPyV1 MK443498 4982 42.6
Human polyomavirus 9 NC_015150 5026 39.2 60.8/64 64.9/67.7 72/77.5 64.6/67.6
African green monkey polyomavirus NC_004763 5270 40.9 59.6/61.5 64/63 69.4/76.4 62.7/67
Pan troglodytes polyomavirus 3 HQ385748 5309 40.9 42.4/36.9 48/39.9 52.9/55 34.7/27.7
Pan troglodytes verus polyomavirus 2c HQ385749 5315 41.1 42.6/37.1 48.1/40.4 52.4/55.2 35.3/27.7
Gorilla gorilla gorilla polyomavirus 1 HQ385752 5300 42.2 43.2/38.2 48.9/39.4 52/54.7 35.4/28
Pan troglodytes verus polyomavirus 1 HQ385746 5303 40.4 43.7/38.7 49.7/41.5 53.1/56.7 36.2/28.6
Artibeus planirostris polyomavirus 1 JQ958887 5371 39.5 44.4/37.3 49.6/39.9 46/52.3 33.4/25.5
Carollia perspicillata polyomavirus 1 JQ958889 5352 42.4 44.9/37.9 48.3/39.4 42.8/49.9 32.6/25.8
Sumatran orang-utan polyomavirus FN356901 5358 38.7 46.9/41.9 45.1/37 59.3/62.6 53.9/47.8
Chimpanzee polyomavirus FR692334 5086 38.2 46.5/41.5 46.2/36.3 43.2/51.4 33.5/29.1
Tupaia glis polyomavirus MG721015 5234 42.1 45.5/39.1 48.3/40.1 43/50.6 31.3/26.1
Molossus molossus polyomavirus 1 JQ958893 4903 40.9 46.1/40.4 44.9/32.3 52.8/50.6 33.1/27.1
Artibeus planirostris polyomavirus 2 JQ958886 5019 41.2 44.5/40.2 45.6/37 55.8/51.5 32.7/27
Sturnira lilium polyomavirus 1 JQ958888 5058 42.2 44.9/40.1 44.7/34.9 53.8/51.2 32.7/27.6
Bornean orang-utan polyomavirus FN356900 5168 40.2 52.7/47.5 49.2/37.8 58.9/56.6 51.7/44.6
Murine polyomavirus strain A3 J02289 5296 47.2 42.7/37.8 42/30.9 57.2/56.9 45.6/37.6
Hamster polyomavirus M26281 5366 41.5 43.5/37.3 39.9/31.8 55.6/55.9 46.2/37
Betapolyomavirus
Human polyomavirus 3 EF127906 5040 39.4 49.3/41.5 42.4/32 36.1/24 27.8/15.1
Murine polyomavirus 2 EF186666 5001 40.3 48/37.7 37.4/29.3 56.8/55.4 44.6/35.4
Mastomys natalensis polyomavirus 1 AB588640 4899 39.9 47.6/37.7 38.3/28.4 58.2/58.4 46.6/39.1
Myotis polyomavirus VM-2008 NC_011310 5081 41.7 45.8/36.4 39/27.9 57.1/57.9 43/36.5
Artibeus planirostris polyomavirus 3 JQ958890 5187 44.2 44.4/39.8 45.9/33.7 59.5/59.1 45.1/38.4
Pteronotus parnellii polyomavirus 1 JQ958891 5041 38.6 45.6/38.8 43.4/34.8 57.2/57.8 43.9/37.2
Desmodus rotundus polyomavirus 1 JQ958892 5201 43.3 47.2/40.5 41.8/33.2 58.7/57.7 43.6/39.3
Equus caballus polyomavirus 1 NC_017982 4987 44.6 46.7/39.7 39/33.9 55.3/56.3 45/42.3
Simian polyomavirus 1 J02400 5243 40.8 44.2/41 42.9/32.8 55.5/51.8 40.5/29.5
Human polyomavirus 1 V01108 5153 39.5 46.1/40.6 42.6/33.3 54.8/51.5 38.4/28
Simian polyomavirus 12 AY614708 5230 41.2 46.2/41.6 43.1/32.8 56.4/53.1 39.8/28.9
Deltapolyomavirus
Human polyomavirus 7 NC_014407 4952 42.9 47.5/40.8 48/40.9 36.2/27.2 31/15.6
Human polyomavirus 6 NC_014406 4926 42.7 46.9/39 46.3/36.8 36.3/25.7 29.3/15.1
Human polyomavirus 10 JX262162 4939 36.7 50.8/42.3 50.4/42.1 49.8/44.9 46.1/33.8
Gammapolymavirus
Pyrrhula pyrrhula polyomavirus 1 DQ192571 5278 51.2 36.6/28 30.4/16.8 53.3/54.3 38.9/31.2
Corvus monedula polyomavirus 1 DQ192570 5079 45.7 36.7/26.9 29.6/21.6 56.5/58.3 42.4/36.4