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Table 2 Papillomavirus genome size, GC content, and gene and protein sequence identities

From: Detection and genome characterization of two novel papillomaviruses and a novel polyomavirus in tree shrew (Tupaia belangeri chinensis) in China

Papillomavirus

GenBank number

Genome size(nt)

G + C content (%)

pairwise identities of nucleotide and amino acid sequence(nt/aa%)

Tupaia belangeri chinensis papillomavirus 1

Tupaia belangeri chinensis papillomavirus 2

L1

L2

E1

E2

E4

E6

E7

L1

L2

E1

E2

E6

E7

TbelPV1

MK443496

7410

48.3

/

/

/

/

/

/

/

/

/

/

/

/

/

TbelPV2

MK443497

7568

54.3

58/54

49/35

56/45

45/31

/

42/27

50/36

/

/

/

/

/

/

Alphapapillomavirus

 Human papillomavirus 2

NC_001352

7860

48.4

55/48

32/28

46/41

39/30

32/13

37/26

39/27

53/50

31/27

47/39

35/25

35/22

39/35

 Human papillomavirus 18

NC_001357

7857

40.4

52/46

35/27

46/37

41/31

23/12

36/26

40/31

52/48

33/27

45/36

32/24

29/18

40/31

 Rhesus monkey papillomavirus

NC_001678

8028

48.0

54/48

33/25

49/41

40/30

–

29/24

37/31

54/49

34/25

49/39

33/26

29/26

40/34

Betapapillomavirus

 Human papillomoavirus type 5

NC_001531

7746

42.4

53/49

40/35

52/44

38/29

19/8

34/25

38/35

53/50

38/35

50/44

33/23

36/27

36/36

Chipapillomavirus

 Canine papillomavirus 3

NC_008297

7801

51.5

55/50

35/31

51/44

38/27

–

35/24

40/29

57/56

36/30

52/44

38/26

37/22

42/32

 Canine papillomavirus 4

NC_010226

7742

53.3

54/52

35/30

50/43

38/29

–

33/24

41/29

56/54

35/30

50/44

37/28

39/27

43/35

Deltapapillomavirus

 Bos grunniens papillomavirus type 1

JX174437

7946

44.4

54/48

30/24

47/38

39/27

34/8

28/18

27/19

52/48

28/22

46/39

32/23

32/18

31/19

Dyodeltapapillomavirus

 Ursus maritimus papillomavirus 1

NC_010739

7582

48.4

56/54

31/26

51/44

39/26

–

39/27

–

59/54

32/26

50/42

37/26

39/28

–

 Feline papillomavirus type 2

EU796884

7899

53.0

55/54

35/27

51/44

34/23

–

38/27

40/34

57/58

36/29

52/47

36/25

38/28

44/32

Dyomupapillomavirus

 Morelia spilota papillomavirus 1

HQ262535

7048

40.9

54/50

31/26

51/43

44/33

34/14

29/21

33/25

53/54

30/25

48/44

36/27

32/26

34/24

Dyorhopapillomavirus

 Equine papillomavirus 2

NC_012123

7802

56.1

56/49

32/27

39/49

38/28

–

25/15

33/19

54/49

31/27

40/48

36/26

26/23

35/22

Gammapapillomavirus

 Human papillomavirus type 4

NC_001457

7353

38.5

53/48

33/25

51/43

43/36

41/17

37/25

37/23

52/53

34/29

48/42

36/27

36/26

36/23

Iotapapillomavirus

 Mastomys natalensis papillomavirus

NC_001605

7687

50.2

55/53

36/31

50/44

32/25

–

33/24

37/24

58/59

33/38

50/48

34/29

39/32

33/29

Kappapapillomavirus

 Cottontail rabbit papillomavirus

NC_001541

7868

46.4

58/56

32/26

49/44

44/36

44/12

23/12

39/31

54/51

32/28

49/43

35/29

21/10

37/28

 Rabbit oral papillomavirus

NC_002232

7565

44.4

59/57

34/31

49/44

43/37

38/10

22/22

43/34

54/53

36/30

48/42

34/29

24/23

42/29

Lambdapapillomavirus

 Crocuta crocutapapillomavirus 1

NC_018575

8344

38.4

55/54

36/34

52/43

45/31

34/14

29/20

40/26

52/50

32/27

48/41

35/25

34/25

38/33

 Procyon lotor papillomavirus 1

NC_007150

8170

45.9

59/59

38/37

52/46

45/38

39/15

32/20

38/26

55/53

36/30

52/46

36/28

33/25

38/38

 Puma concolor papillomavirus type 1

AY904723

8321

47.2

56/55

39/37

53/47

44/31

32/21

39/23

35/26

54/50

37/31

51/44

37/27

38/27

37/30

Mupapillomavirus

 Human papillomavirus 1

NC_001356

7815

40.3

56/55

39/37

51/45

42/32

–

41/27

41/27

55/54

36/31

49/45

35/28

37/28

42/37

 Human papillomavirus type 63

NC_001458

7348

40.4

60/59

38/36

51/44

44/34

34/12

39/29

36/28

55/56

35/32

49/43

36/26

36/25

41/34

Zetapapillomavirus

 Equus caballus papillomavirus type 1

NC_003748

7610

53.0

53/50

32/26

50/41

43/34

28/10

27/21

39/26

54/52

32/24

51/48

37/28

33/23

39/32