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Table 2 Pathogenesis-related proteins identified after MS/MS analysis

From: Contribution of Tomato torrado virus Vp26 coat protein subunit to systemic necrosis induction and virus infectivity in Solanum lycopersicum

ID

Name

Theoretical MW [Da]

Sequence coverage [%]

Peptides matched

Score rank

gi|19,315

pathogenesis-related protein PR P23 [Sl]

26,024

40

R.NNCPYTVWAASTPIGGGR.R

R.GQTWVINAPR.G

R.TNCNFDGAGR.G

K.CHAIHCTANINGECPGSLR.V

R.VPGGCNNPCTTFGGQQYCCTQGPCGPTDLSR.F

R.CPDAYSYPQDDPTSTFTCPSGSTNYR.V

322/441

gi|7,414,370

pathogenesis-related protein (PR-5 protein) [Sl]

28,437

25

R.GQSWWFWAPPGTK.M

R.TNCNFDGAGR.G

R.GWCQTGDCGGVLDCK.G

R.CPDAYSYPQDDPTSTFTCQSWTTDYK.I

K.CHPIQCTANINGECPGSLR.V

299/334/383

gi|460,404,652

pathogenesis-related protein STH-2-like [Sl]

17,472

42

K.GLVLDFDSLVPK.L

K.LLSHDVK.S

K.SIEIVEGDGGAGSIK.Q

K.QMNFVEGGPIK.Y + Oxidation (M)

K.IHVIDDK.N

K.IHVIDDKNLVTK.Y

K.YSLIEGDVLGDK.L

K.YSLIEGDVLGDKLESIAYDVK.F

K.FEAAGDGGCVCK.T

K.GDHVVSEEEHNVGK.G

K.AIDLFK.A

K.AIEAYLLANPSVYA.-

193/225/599

gi|224,802

pathogenesis-related, protein p14 [Sl]

14,589

13

R.AQVGVGPMSWDANLASR.A + Oxidation (M)

119/152/279

gi|372,995,481

pathogenesis-related protein PR-10 [Nt]

17,870

15

K.ALVLDADNLIPK.L

K.LHVIDDK.N

K.LHVIDDKNLVTK.Y

K.YSLIEGDVLGDK.L

45/94/151

gi|4,582,642

ribonuclease T2 [Sl]

27,157

7

R.ESSLDESEFSDLISTMEK.N + Oxidation (M)

128

gi|460,400,304

pathogenesis-related protein P69G [Sl]

80,109

4

K.SSYTVQIASPK.G

K.LTYQVTFSK.T

R.SPIAVVLALAK.-

110

gi|51,317,936

pathogenesis-related protein 10 [Sv]

17,690

24

K.QMNFVEGGPIK.Y + Oxidation (M)

K.IHVIDDK.N

K.YSLIEGDVLGDK.L

K.YSLIEGDVLGDKLESINYDIK.F

179

gi|460,402,446

pathogenesis-related leaf protein 4-like [Sl]

18,215

14

R.ASELWVAEKPNYNYGTNQCASGK.V

96

  1. The MS/MS analysis concerns the protein fraction characterized by induced RNase activity. Identified proteins with a score higher than 130 (represented at least twice) are shown in bold. Sl, Solanum lycopersicum; Sv, Solanum virginianum; Nt, Nicotiana tabacum