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Table 4 RSCU analysis of AfuPmV-1, AfuCV, and AfuPV-1

From: Analysis of the codon usage pattern of the RdRP gene of mycovirus infecting Aspergillus spp.

AA Codon AfuPmV-1 AfuCV AfuPV-1 AA Codon AfuPmV-1 AfuCV AfuPV-1
Phe UUU 0.21a 0.90 0.79 Ser UCU 0.56a 0.71 1.38
UUC 1.79 b 1.10 1.21 UCC 2.89 b 0.88 1.38
Leu UUA 0.08a 0.67 0.30 UCA 0.44a 1.24 1.54
UUG 0.46a 1.27 1.20 UCG 0.89 0.35a 0.15a
CUU 0.92 0.33a 1.35 Pro CCU 0.67 0.59a 0.93
CUC 3.69 b 0.20a 1.35 CCC 1.92 b 0.94 1.07
CUA 0.08a 1.73 0.60a CCA 0.67 1.18 1.20
CUG 0.77 1.80 b 1.20 CCG 0.75 1.29 0.80
Ile AUU 1.08 0.72 0.57a Thr ACU 0.67 1.25 1.29
AUC 1.32 1.03 1.86 b ACC 2.00 b 1.10 1.16
AUA 0.60a 1.24 0.57a ACA 0.08a 1.10 0.52a
Val GUU 0.29a 0.96 0.70 ACG 1.25 0.55a 1.03
GUC 3.07 b 0.92 0.35a Ala GCU 0.54a 1.39 0.94
GUA 0.07a 0.92 0.52a GCC 2.43 b 0.91 0.71
GUG 0.57a 1.20 2.43 b GCA 0.27a 1.33 1.18
Tyr UAU 0.35a 1.04 1.20 GCG 0.76 0.36a 1.18
UAC 1.65 b 0.96 0.80 Cys UGU 0.67 1.00 1.33
His CAU 0.46a 0.76 1.25 UGC 1.33 1.00 0.67
CAC 1.54 1.24 0.75 Arg CGU 0.70 0.64 2.17 b
Gln CAA 0.33a 0.77 1.22 CGC 2.50 b 0.72 0.77
CAG 1.67 b 1.23 0.78 CGA 0.30a 0.56a 1.15
Asn AAU 0.42a 0.83 0.77 CGG 1.30 1.04 0.51a
AAC 1.58 1.17 1.23 Ser AGU 0.11a 0.88 0.92
Lys AAA 0.50a 0.71 0.60a AGC 1.11 1.94 b 0.62
AAG 1.50 1.29 1.40 Arg AGA 0.00a 1.12 0.64
Asp GAU 0.44a 1.04 1.20 AGG 1.20 1.92 b 0.77
GAC 1.56 0.96 0.80 Gly GGU 0.81 1.21 1.40
Glu GAA 0.35a 0.46a 0.74 GGC 1.41 0.97 1.20
GAG 1.65 b 1.54 1.26 GGA 0.59a 0.79 0.70
     GGG 1.19 1.03 0.70
  1. AA amino acid
  2. Non-degenerate amino acids (Met, Trp) and stop codons are excluded
  3. The boldface are the most preferred codons
  4. aRSCU value ≤0.6; under-represented codons
  5. bRSCU value ≥1.6; over-represented codons