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Table 4 RSCU analysis of AfuPmV-1, AfuCV, and AfuPV-1

From: Analysis of the codon usage pattern of the RdRP gene of mycovirus infecting Aspergillus spp.

AA

Codon

AfuPmV-1

AfuCV

AfuPV-1

AA

Codon

AfuPmV-1

AfuCV

AfuPV-1

Phe

UUU

0.21a

0.90

0.79

Ser

UCU

0.56a

0.71

1.38

UUC

1.79 b

1.10

1.21

UCC

2.89 b

0.88

1.38

Leu

UUA

0.08a

0.67

0.30

UCA

0.44a

1.24

1.54

UUG

0.46a

1.27

1.20

UCG

0.89

0.35a

0.15a

CUU

0.92

0.33a

1.35

Pro

CCU

0.67

0.59a

0.93

CUC

3.69 b

0.20a

1.35

CCC

1.92 b

0.94

1.07

CUA

0.08a

1.73

0.60a

CCA

0.67

1.18

1.20

CUG

0.77

1.80 b

1.20

CCG

0.75

1.29

0.80

Ile

AUU

1.08

0.72

0.57a

Thr

ACU

0.67

1.25

1.29

AUC

1.32

1.03

1.86 b

ACC

2.00 b

1.10

1.16

AUA

0.60a

1.24

0.57a

ACA

0.08a

1.10

0.52a

Val

GUU

0.29a

0.96

0.70

ACG

1.25

0.55a

1.03

GUC

3.07 b

0.92

0.35a

Ala

GCU

0.54a

1.39

0.94

GUA

0.07a

0.92

0.52a

GCC

2.43 b

0.91

0.71

GUG

0.57a

1.20

2.43 b

GCA

0.27a

1.33

1.18

Tyr

UAU

0.35a

1.04

1.20

GCG

0.76

0.36a

1.18

UAC

1.65 b

0.96

0.80

Cys

UGU

0.67

1.00

1.33

His

CAU

0.46a

0.76

1.25

UGC

1.33

1.00

0.67

CAC

1.54

1.24

0.75

Arg

CGU

0.70

0.64

2.17 b

Gln

CAA

0.33a

0.77

1.22

CGC

2.50 b

0.72

0.77

CAG

1.67 b

1.23

0.78

CGA

0.30a

0.56a

1.15

Asn

AAU

0.42a

0.83

0.77

CGG

1.30

1.04

0.51a

AAC

1.58

1.17

1.23

Ser

AGU

0.11a

0.88

0.92

Lys

AAA

0.50a

0.71

0.60a

AGC

1.11

1.94 b

0.62

AAG

1.50

1.29

1.40

Arg

AGA

0.00a

1.12

0.64

Asp

GAU

0.44a

1.04

1.20

AGG

1.20

1.92 b

0.77

GAC

1.56

0.96

0.80

Gly

GGU

0.81

1.21

1.40

Glu

GAA

0.35a

0.46a

0.74

GGC

1.41

0.97

1.20

GAG

1.65 b

1.54

1.26

GGA

0.59a

0.79

0.70

    

GGG

1.19

1.03

0.70

  1. AA amino acid
  2. Non-degenerate amino acids (Met, Trp) and stop codons are excluded
  3. The boldface are the most preferred codons
  4. aRSCU value ≤0.6; under-represented codons
  5. bRSCU value ≥1.6; over-represented codons