Analysis of the codon usage pattern of the RdRP gene of mycovirus infecting Aspergillus spp.

Table 2 Summary of datasets

No.	Accession no.		Fungal host	Mycovirus	Abbr.	Length		Ref.
No.	Nucleotide	Protein	Fungal host	Mycovirus	Abbr.	Nucleotide (nt)	Protein (aa)	Ref.
1	FN376847	CAY25801	Aspergillus fumigatus	partitivirus-1	AfuPV-1	1629	542	[22]
2	FN178512	CAX48749	Aspergillus fumigatus	chrysovirus	AfuCV	3345	1114	[23]
3	HG975302	CDP74618	Aspergillus fumigatus	polymycovirus-1^b	AfuPmV-1	2292	763	[5]
4	HE588144	CCD33020	Aspergillus foetidus	alternavirus^c	AfAltV	3375	1124	[24]
5	HE588147	CCD33024	Aspergillus foetidus	victorivirus^d	AfVV	2520	839	[25]
6	HE588148	CCD33025	Aspergillus foetidus	exartavirus^e	AfExV	2889	962	[26]
7	DQ270031	ABC86749	Aspergillus ochraceus	partitivirus	AoPV	1620	539	[27]
8	EU289897^a	ABX79997	Aspergillus niger	alternavirus	AniAltV	3375	1124	[28]
9	MF444217	AWY10945	Sclerotinia sclerotiorum	tetramycovirus-1	SstRV1	2403	800	[29]
10	MF317878	AVZ65983	Penicillium digitatum	polymycoviruses 1	PdPmV1	2283	760	[30]
11	LN896307	CUS18595	Beauveria bassiana	polymycovirus 1	BbPmV-1	2328	775	[6]
12	LN896311	CUS18599	Beauveria bassiana	polymycovirus 2	BbPmV-2	2304	767	[6]
13	LC350277	BBC27878	Alternaria alternata	chrysovirus 1	AaCV1	3354	1174	[31]
14	KM235317	AKF14154	Penicillium marneffei	partitivirus-1	TmPV1	1638	545	[32]

No. 1~8: mycoviruses infecting Aspergillus (Group 1); No. 9~12: other polymycoviruses (Group 2); No. 13~14: hypervirulence-related mycoviruses (Group 3)
^aputative RdRP gene
^boriginally named Aspergillus fumigatus tetramycovirus-1
^cproposed name of Aspergillus foetidus fast virus
^dproposed name of Aspergillus foetidus slow virus 1
^eproposed name of Aspergillus foetidus slow virus 2

ISSN: 1743-422X