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Fig. 3 | Virology Journal

Fig. 3

From: Characterization, phylogeny and recombination analysis of Pedilanthus leaf curl virus-Petunia isolate and its associated betasatellite

Fig. 3

Phylogenetic trees of PeLCV and DiYVB. a Maximum likelihood phylogenetic tree of PeLCV was constructed based on MUSCLE alignment of selected begomovirus sequences from GenBank and sequences obtained here. African cassava mosaic virus (ACMV) sequence was used as an outgroup to validate the tree. The isolates of PeLCV are presented with different colors and divided into different clusters, based on their country of origin. The recombination between PaLCuV and RaLCuV was obtained through RDP4. Acronyms of viruses were taken from [24]. b Phylogenetic tree of DiYVB was generated by MUSCLE alignment using related betasatellite sequences from GenBank and sequence obtained here. TbLCuB isolates from India and Pakistan constitute separate groups, whereas the DiYVB cluster is dominated by isolates from Pakistan. The MF135487 isolate was identified from petunia in this study, while KY937948 was isolated from Chenopodium, in combination with PeLCV. Cotton leaf curl Multan alphasatellite was taken as outgroup. The numbers at each node represent the percentage of 1000 bootstrap values

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