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Table 3 Screened PRP family genes

From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

PR family

Unigene ID

Protein properties

log2FCa

qvaluea

log2FCb

qvalueb

PR1

Niben101Scf13926g01014

Cysteine-rich secretory protein, allergen V5/Tpx-1-related

    

Niben101Scf03376g03004

Cysteine-rich secretory protein, allergen V5/Tpx-1-related

    

Niben101Scf00107g03008

Cysteine-rich secretory protein, allergen V5/Tpx-1-related

    

Niben101Scf01999g07002

Cysteine-rich secretory protein, allergen V5/Tpx-1-related

    

PR2

Niben101Scf01001g00005

Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17

    

Niben101Scf01001g00004

Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17

    

Niben101Scf01001g00003

Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17

  

Inf

0.023496

Niben101Ctg13736g00004

Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17

  

Inf

1.94E-04

Niben101Scf04869g03002

Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17

3.9490

0.038646

5.4381

2.14E-04

 

Niben101Scf01001g00006

Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17

    

PR3

Niben101Scf02041g00002

Chitinase 8, Glycoside hydrolase, family 19

  

5.1058

1.99E-05

PR4

Niben101Scf01400g00014

Thaumatin-like protein

    

Niben101Scf03436g01016

Thaumatin-like protein

    

PR5

Niben101Scf00126g00008

Pathogenesis-related thaumatin superfamily protein

0.9949

0.027102

  

Niben101Scf05554g05006

Pathogenesis-related thaumatin superfamily protein

1.4585

3.24E-08

  

PR6

Niben101Scf00953g05001

Cysteine-rich secretory protein, allergen V5/Tpx-1-related

    

Niben101Scf04053g01004

Cysteine-rich secretory protein, allergen V5/Tpx-1-related

    

PR9

Niben101Scf03460g04004

Peroxidase 53, Haem peroxidase

    

Niben101Scf07182g05012

Peroxidase 53, Haem peroxidase

    

PR10

Niben101Scf03526g00006

Major pollen allergen Bet v 1-M/N, Bet v I type allergen

    

Niben101Scf10735g00016

Major pollen allergen Bet v 1-M/N, Bet v I type allergen

    

Niben101Scf02474g01024

Major pollen allergen Bet v 1-M/N, Bet v I type allergen

    

Niben101Scf01938g04007

Major pollen allergen Bet v 1-M/N, Bet v I type allergen

    

PR11

Niben101Scf06295g04023

Chitinase-3-like protein 2, Glycoside hydrolase superfamily

4.4843

0.007133

  

Niben101Scf01789g04010

Chitinase-3-like protein 2, Glycoside hydrolase superfamily

    

PR17

Niben101Scf03385g02011

Plant basic secretory protein family protein, uncharacterised protein family

  

2.7696

6.69E-04

Niben101Scf03385g01006

Plant basic secretory protein family protein, uncharacterised protein family

    

Niben101Scf01341g01002

Plant basic secretory protein family protein, uncharacterised protein family

    

Niben101Ctg10643g00004

Plant basic secretory protein family protein, uncharacterised protein family

    
  1. log2FC > 0, up-regulated, log2FC < 0, down-regulated. Inf: the readcount of control (CK) was zero. Blank lattices show genes expression has no significant difference
  2. FC Fold change
  3. aY35AB vs. CK
  4. bY35A vs. CK