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Table 3 Screened PRP family genes

From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

PR family Unigene ID Protein properties log2FCa qvaluea log2FCb qvalueb
PR1 Niben101Scf13926g01014 Cysteine-rich secretory protein, allergen V5/Tpx-1-related     
Niben101Scf03376g03004 Cysteine-rich secretory protein, allergen V5/Tpx-1-related     
Niben101Scf00107g03008 Cysteine-rich secretory protein, allergen V5/Tpx-1-related     
Niben101Scf01999g07002 Cysteine-rich secretory protein, allergen V5/Tpx-1-related     
PR2 Niben101Scf01001g00005 Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17     
Niben101Scf01001g00004 Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17     
Niben101Scf01001g00003 Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17    Inf 0.023496
Niben101Ctg13736g00004 Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17    Inf 1.94E-04
Niben101Scf04869g03002 Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17 3.9490 0.038646 5.4381 2.14E-04
  Niben101Scf01001g00006 Glucan endo-1,3-beta-glucosidase-like, Glycoside hydrolase, family 17     
PR3 Niben101Scf02041g00002 Chitinase 8, Glycoside hydrolase, family 19    5.1058 1.99E-05
PR4 Niben101Scf01400g00014 Thaumatin-like protein     
Niben101Scf03436g01016 Thaumatin-like protein     
PR5 Niben101Scf00126g00008 Pathogenesis-related thaumatin superfamily protein 0.9949 0.027102   
Niben101Scf05554g05006 Pathogenesis-related thaumatin superfamily protein 1.4585 3.24E-08   
PR6 Niben101Scf00953g05001 Cysteine-rich secretory protein, allergen V5/Tpx-1-related     
Niben101Scf04053g01004 Cysteine-rich secretory protein, allergen V5/Tpx-1-related     
PR9 Niben101Scf03460g04004 Peroxidase 53, Haem peroxidase     
Niben101Scf07182g05012 Peroxidase 53, Haem peroxidase     
PR10 Niben101Scf03526g00006 Major pollen allergen Bet v 1-M/N, Bet v I type allergen     
Niben101Scf10735g00016 Major pollen allergen Bet v 1-M/N, Bet v I type allergen     
Niben101Scf02474g01024 Major pollen allergen Bet v 1-M/N, Bet v I type allergen     
Niben101Scf01938g04007 Major pollen allergen Bet v 1-M/N, Bet v I type allergen     
PR11 Niben101Scf06295g04023 Chitinase-3-like protein 2, Glycoside hydrolase superfamily 4.4843 0.007133   
Niben101Scf01789g04010 Chitinase-3-like protein 2, Glycoside hydrolase superfamily     
PR17 Niben101Scf03385g02011 Plant basic secretory protein family protein, uncharacterised protein family    2.7696 6.69E-04
Niben101Scf03385g01006 Plant basic secretory protein family protein, uncharacterised protein family     
Niben101Scf01341g01002 Plant basic secretory protein family protein, uncharacterised protein family     
Niben101Ctg10643g00004 Plant basic secretory protein family protein, uncharacterised protein family     
  1. log2FC > 0, up-regulated, log2FC < 0, down-regulated. Inf: the readcount of control (CK) was zero. Blank lattices show genes expression has no significant difference
  2. FC Fold change
  3. aY35AB vs. CK
  4. bY35A vs. CK