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Table 2 Screened candidate genes in Y35AB and Y35A

From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

Gene symbol Unigene ID Protein properties log2FCa log2FCb pathway
PsaFa Niben101Scf 00271g04024 photosystem I reaction center subunitIII, chloroplastic-like -1.4180 -1.1769 Photosynthesis
PsaFb Niben101Scf 02156g05001 photosystem I reaction center subunit III, chloroplastic-like -1.5190 -1.6335 Photosynthesis
PsaFc Niben101Scf 04964g00002 photosystem I reaction center subunit III, chloroplastic-like -1.5257 -1.2865 Photosynthesis
PsaNa Niben101Scf 17701g01020 photosystem I reaction center subunit N, chloroplastic-like -1.6702 -1.5537 Photosynthesis
PsaNb Niben101Scf 35628g00001 photosystem I reaction center subunit N, chloroplastic-like -1.3129 -1.0396 Photosynthesis
ChlHa Niben101Scf 04388g00011 magnesium-chelatase subunit ChlH, chloroplastic-like -1.6623 -2.1794 Porphyrin and chlorophyll metabolism
ChlHb Niben101Scf 07214g00015 magnesium-chelatase subunit ChlH, chloroplastic-like -1.4638 -1.8585 Porphyrin and chlorophyll metabolism
BchP Niben101Scf 06249g03002 geranylgeranyl diphosphate reductase, chloroplastic-like -1.8576 -1.0521 Porphyrin and chlorophyll metabolism
HemA Niben101Scf 10063g00003 glutamyl-tRNA reductase 1,chloroplastic-like -1.4101 -2.0903 Porphyrin and chlorophyll metabolism
DXS Niben101Scf 00246g04005 probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like -1.0040 -1.0126 Metabolic pathways
GME1-X1 Niben101Scf 01696g06050 GDP-mannose 3,5-epimerase 1-like,transcript variant X1 -1.6022 -1.1137 Metabolic pathways
CAB3A Niben101Scf 03961g00004 chlorophyll a-b binding protein 50, chloroplastic-like -1.1418 -1.0719 Metabolic pathways
GDCSa Niben101Scf 02480g02012 glycine dehydrogenase (decarboxylating), mitochondrial-like -1.5732 -1.1698 Carbon metabolism
GDCSb Niben101Scf 03839g04019 glycine dehydrogenase (decarboxylating), mitochondrial-like -1.1991 -1.0395 Carbon metabolism
rbcS Niben101Scf 02381g04022 ribulose bisphosphate carboxylase small chain S41, chloroplastic-like -1.2691 0.7603 Carbon fixation in photosynthetic organisms
FBA1 Niben101Scf 02864g04008 fructose-bisphosphate aldolase 1,chloroplastic-like -1.3167 -1.0072 Carbon fixation in photosynthetic organisms
glsF Niben101Scf 04198g01002 ferredoxin-dependent glutamate synthase, chloroplastic-like -1.1161 -1.0704 Glyoxylate and dicarboxylate metabolism
GRP Niben101Scf 03052g00011 glycine-rich protein-like 2.1379 1.4647 No pathway enriched
GRP3a Niben101Scf 01084g05013 glycine-rich protein 3-like 3.9423 3.1735 No pathway enriched
GRP3b Niben101Scf 01084g03004 glycine-rich protein 3-like 2.0529 1.8836 No pathway enriched
CAX3 Niben101Scf 01329g00002 vacuolar cation/proton exchanger 3-like -2.2799 -1.2535 No pathway enriched
FSD1 Niben101Scf 03679g03009 Fe superoxide dismutas ,chloroplastic-like -2.1527 -1.9924 No pathway enriched
PU Niben101Scf 10524g02015 putative uncharacterized protein 2.0616 0.9243 No pathway enriched
  1. FC Fold change
  2. aY35AB vs. CK
  3. bY35A vs. CK