Table 2 Screened candidate genes in Y35AB and Y35A
From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus
Gene symbol | Unigene ID | Protein properties | log2FCa | log2FCb | pathway |
|---|---|---|---|---|---|
PsaFa | Niben101Scf 00271g04024 | photosystem I reaction center subunitIII, chloroplastic-like | -1.4180 | -1.1769 | Photosynthesis |
PsaFb | Niben101Scf 02156g05001 | photosystem I reaction center subunit III, chloroplastic-like | -1.5190 | -1.6335 | Photosynthesis |
PsaFc | Niben101Scf 04964g00002 | photosystem I reaction center subunit III, chloroplastic-like | -1.5257 | -1.2865 | Photosynthesis |
PsaNa | Niben101Scf 17701g01020 | photosystem I reaction center subunit N, chloroplastic-like | -1.6702 | -1.5537 | Photosynthesis |
PsaNb | Niben101Scf 35628g00001 | photosystem I reaction center subunit N, chloroplastic-like | -1.3129 | -1.0396 | Photosynthesis |
ChlHa | Niben101Scf 04388g00011 | magnesium-chelatase subunit ChlH, chloroplastic-like | -1.6623 | -2.1794 | Porphyrin and chlorophyll metabolism |
ChlHb | Niben101Scf 07214g00015 | magnesium-chelatase subunit ChlH, chloroplastic-like | -1.4638 | -1.8585 | Porphyrin and chlorophyll metabolism |
BchP | Niben101Scf 06249g03002 | geranylgeranyl diphosphate reductase, chloroplastic-like | -1.8576 | -1.0521 | Porphyrin and chlorophyll metabolism |
HemA | Niben101Scf 10063g00003 | glutamyl-tRNA reductase 1,chloroplastic-like | -1.4101 | -2.0903 | Porphyrin and chlorophyll metabolism |
DXS | Niben101Scf 00246g04005 | probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like | -1.0040 | -1.0126 | Metabolic pathways |
GME1-X1 | Niben101Scf 01696g06050 | GDP-mannose 3,5-epimerase 1-like,transcript variant X1 | -1.6022 | -1.1137 | Metabolic pathways |
CAB3A | Niben101Scf 03961g00004 | chlorophyll a-b binding protein 50, chloroplastic-like | -1.1418 | -1.0719 | Metabolic pathways |
GDCSa | Niben101Scf 02480g02012 | glycine dehydrogenase (decarboxylating), mitochondrial-like | -1.5732 | -1.1698 | Carbon metabolism |
GDCSb | Niben101Scf 03839g04019 | glycine dehydrogenase (decarboxylating), mitochondrial-like | -1.1991 | -1.0395 | Carbon metabolism |
rbcS | Niben101Scf 02381g04022 | ribulose bisphosphate carboxylase small chain S41, chloroplastic-like | -1.2691 | 0.7603 | Carbon fixation in photosynthetic organisms |
FBA1 | Niben101Scf 02864g04008 | fructose-bisphosphate aldolase 1,chloroplastic-like | -1.3167 | -1.0072 | Carbon fixation in photosynthetic organisms |
glsF | Niben101Scf 04198g01002 | ferredoxin-dependent glutamate synthase, chloroplastic-like | -1.1161 | -1.0704 | Glyoxylate and dicarboxylate metabolism |
GRP | Niben101Scf 03052g00011 | glycine-rich protein-like | 2.1379 | 1.4647 | No pathway enriched |
GRP3a | Niben101Scf 01084g05013 | glycine-rich protein 3-like | 3.9423 | 3.1735 | No pathway enriched |
GRP3b | Niben101Scf 01084g03004 | glycine-rich protein 3-like | 2.0529 | 1.8836 | No pathway enriched |
CAX3 | Niben101Scf 01329g00002 | vacuolar cation/proton exchanger 3-like | -2.2799 | -1.2535 | No pathway enriched |
FSD1 | Niben101Scf 03679g03009 | Fe superoxide dismutas ,chloroplastic-like | -2.1527 | -1.9924 | No pathway enriched |
PU | Niben101Scf 10524g02015 | putative uncharacterized protein | 2.0616 | 0.9243 | No pathway enriched |