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Table 1 Summary of the results of RNA-seq data

From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

Sample name Y35AB-1 Y35AB-2 Y35AB-3 Y35A-1 Y35A-2 Y35A-3 CK-1 CK-2 CK-3 mean
Raw reads 12166453 11965470 13272880 15527372 12560210 14214740 12646000 11302705 11794017 12827761
Clean reads 12032720 11834496 13118731 15503750 12537134 14192135 12633203 11290015 11782562 12769416
Clean bases 0.60G 0.59G 0.66G 0.78G 0.63G 0.71G 0.63G 0.56G 0.59G 0.64
Total mapped 11620770 11438690 12605297 14934455 12075773 13732342 12346163 11139553 11524248 12379699
96.58% 96.66% 96.09% 96.33% 96.32% 96.76% 97.73% 98.67% 97.81% 96.99%
Uniquely mapped 8961324 8847537 9609766 11389720 9176512 10320807 9238644 8316046 8564617 9380553
74.47% 74.76% 73.25% 73.46% 73.19% 72.72% 73.13% 73.66% 72.69% 73.48%
Q30 (%) 95.74 95.68 95.58 96.20 96.08 96.14 95.76 95.70 95.80 95.85
GC contents (%) 43.58 43.75 44.11 44.15 44.23 44.38 43.93 43.80 43.92 43.98
  1. Note: Clean reads: Reads from sequencing after filtering low-quality reads. Clean bases: The number of clean reads is multiplied by the length and converted to G. Q30: The percentage of bases with a Phred value >30