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Table 3 T36-CA nucleotide (nt) and deduced amino acid (aa) identities compared with other CTV strains

From: Nucleotide heterogeneity at the terminal ends of the genomes of two California Citrus tristeza virus strains and their complete genome sequence analysis

  T36-CAa T36 -FL T30-CA SY568 (CA) RB-AT25 (CA) VT-AT39 (CA)
Regionsb Number of nts Number of aa nt identity (%) aa identity (%) nt identity (%) aa identity (%) nt identity (%) aa identity (%) nt identity (%) aa identity (%) nt identity (%) aa identity (%)
Full genome 19,292   99.1   81.7   81.5   90.8   80.8  
5′ UTR 106   99.1   55.3   58.1   99.1   60.6  
p349 9369 3123 99.1 98.9 72.9 74.5 73.2 74.9 90.6 74.5 73.2 75.1
RdRp 1503 501 99.6 99.8 80.0 92.0 77.1 89.5 90.5 96.0 81.1 90.9
p33 912 304 98.1 97.7 84.5 86.8 84.8 87.1 85.5 86.8 85.2 85.5
p6 156 52 98.7 98.0 89.7 96.1 89.7 96.1 88.5 96.1 91.0 96.1
p65 (HSP70h) 1785 595 99.3 99.2 94.1 96.5 94.1 96.6 88.4 94.3 89.2 95.0
p61 1608 536 99.0 98.1 95.4 96.6 96.7 96.8 94.2 95.9 88.6 91.8
p27 (CPm) 723 241 98.9 100.0 93.9 95.4 88.8 94.6 93.8 95.0 89.4 95.8
p25 (CP) 672 224 99.7 99.6 93.2 96.4 93.6 95.5 93.8 95.5 93.3 96.0
p18 504 168 99.4 99.4 95.2 95.8 92.7 94.0 96.2 95.2 58.4 95.2
p13 360 120 98.9 99.2 91.7 92.4 90.8 89.1 94.4 93.3 91.4 92.4
p20 549 183 99.1 97.8 88.5 92.3 91.4 96.2 90.5 93.4 90.7 94.5
p23 630 210 98.6 99.0 90.5 89.5 90.8 90.4 88.3 88.0 91.3 90.9
3′ UTR 273   99.6   97.4   97.8   97.1   97.1  
  1. aA pairwise comparison was made between the genome sequence of T36-CA and that of the T36 genotype from Florida (T36-FL) or each of the sequences representing other CTV strains from California (CA), including T30-CA (obtained in this study), as indicated
  2. bRegions in the CTV genome listed in the order of appearance from the 5′ to 3′ untranslated regions (UTR) s (as seen in Fig. 1)