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Table 4 qPCR analysis of de novo sequencing differentially expressed genes from B.dothidea across the three groups of LW-CP, LW-C, and LW-P

From: De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)

Gene ID LW-CP LW-C LW-P Regulation Function (Nr)
log2FC RT-qPCR log2FC RT-qPCR log2FC RT-qPCR
CL2349.Contig4_All 4.32 3.5 3.51 1.21 1.64 3.14 Up Aa Family ATPase
CL51.Contig10_All 4.86 1.2 4.00 0.01 4.25 1.87 Up putative cytoskeleton organisation protein
CL1218.Contig1_All 9.41 1.08 6.82 0.78 6.02 1.69 Up Acyltransferase Choactase/COT/CPT
Unigene3107_All 4.89 1.41 3.95 0.54 / 1.98 Up Ribonuclease III
CL4042.Contig3_All 6.04 2.7 6.23 1.48 6.73 2.28 Up HR1 repeat rho-binding protein
Unigene4082_All 2.53 3.38 1.94 1.78 / 1.08 Up Hypothetical protein MPH_05438
CL5019.Contig2_All 8.19 4.48 8.68 2.10 6.91 1.97 Up Hypothetical protein MPH_07087
CL1217.Contig1_All −2.44 −1.67 −1.82 −0.15 −1.29 −0.13 Down Putative ABC transporter
CL1346.Contig4_All −2.13 −1.61 − 2.39 −2.19 − 1.31 −0.76 Down Cytochrome P450
  1. Note: “/ indicated no significantly differential expression