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Table 4 qPCR analysis of de novo sequencing differentially expressed genes from B.dothidea across the three groups of LW-CP, LW-C, and LW-P

From: De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)

Gene ID

LW-CP

LW-C

LW-P

Regulation

Function (Nr)

log2FC

RT-qPCR

log2FC

RT-qPCR

log2FC

RT-qPCR

CL2349.Contig4_All

4.32

3.5

3.51

1.21

1.64

3.14

Up

Aa Family ATPase

CL51.Contig10_All

4.86

1.2

4.00

0.01

4.25

1.87

Up

putative cytoskeleton organisation protein

CL1218.Contig1_All

9.41

1.08

6.82

0.78

6.02

1.69

Up

Acyltransferase Choactase/COT/CPT

Unigene3107_All

4.89

1.41

3.95

0.54

/

1.98

Up

Ribonuclease III

CL4042.Contig3_All

6.04

2.7

6.23

1.48

6.73

2.28

Up

HR1 repeat rho-binding protein

Unigene4082_All

2.53

3.38

1.94

1.78

/

1.08

Up

Hypothetical protein MPH_05438

CL5019.Contig2_All

8.19

4.48

8.68

2.10

6.91

1.97

Up

Hypothetical protein MPH_07087

CL1217.Contig1_All

−2.44

−1.67

−1.82

−0.15

−1.29

−0.13

Down

Putative ABC transporter

CL1346.Contig4_All

−2.13

−1.61

− 2.39

−2.19

− 1.31

−0.76

Down

Cytochrome P450

  1. Note: “/ indicated no significantly differential expression