De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)

Lihua Wang; Hui Luo; Wangcheng Hu; Yuekun Yang; Ni Hong; Guoping Wang; Aiming Wang; Liping Wang

doi:10.1186/s12985-018-1033-4

Table 3 Annotation of differentially expressed genes from B.dothidea strains in NR database

From: De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)

Gene ID	Length (nt)	Expression				log2FC			Regulation model	Nr-Annotation
Gene ID	Length (nt)	Mock	LW-CP	LW-C	LW-P	LW-CP /Mock	LW-C/Mock	LW-P/Mock	Regulation model	Nr-Annotation
CL1433.Contig1_All	2180	1.18	8.26	5.97	4.99	2.81	2.34	2.08	Up	putative amino acid permease protein
CL1608.Contig2_All	3553	3.65	35.67	30.32	12.37	3.29	3.05	1.76	Up	Sugar/inositol transporter
CL1856.Contig1_All	6267	0.01	1.9	0.18	0.59	7.57	4.17	5.88	Up	Kelch repeat type 1
CL2868.Contig1_All	3689	0.01	2.98	6.95	0.46	8.22	9.44	5.52	Up	Major facilitator superfamily
Unigene8027_All	1901	6.98	52.68	30.36	25.3	2.92	2.12	1.86	Up	GTP-binding domain HSR1-related protein
CL1210.Contig8_All	2904	0.01	5.08	1.23	1.03	8.99	6.94	6.69	Up	putative c6 transcription factor protein
CL1218.Contig1_All	3928	0.01	6.8	1.13	0.65	9.41	6.82	6.02	Up	Acyltransferase ChoActase/COT/CPT
CL1266.Contig2_All	1880	2.64	9.75	12.76	5.98	1.88	2.27	1.18	Up	CMP/dCMP deaminase zinc-binding protein
CL1272.Contig4_All	6904	0.01	6.24	6.28	2.32	9.29	9.29	7.86	Up	AIG1-like protein
CL1316.Contig1_All	1801	3.17	12.97	6.53	23.62	2.03	1.04	2.9	Up	Glutathione S-transferase transferase
CL1837.Contig3_All	1879	0.29	5.12	2.26	1.49	4.14	2.96	2.36	Up	Hrf1
CL2854.Contig1_All	5786	0.63	3.61	2.03	2.25	2.52	1.69	1.84	Up	Dopey
CL4079.Contig1_All	5893	0.01	1.48	1.12	0.28	7.21	6.81	4.81	Up	Putative ABC transporter protein
CL4156.Contig1_All	3680	0.01	16.2	4.06	1.68	10.66	8.67	7.39	Up	putative ubiquitin carboxyl-terminal hydrolase protein
CL54.Contig2_All	3595	0.01	4.58	1.8	0.64	8.84	7.49	6	Up	Chitin synthase
CL558.Contig1_All	2880	0.5	2.84	1.8	1.55	2.51	1.85	1.63	Up	Amino acid transporter transmembrane
Unigene1080_All	1950	1.89	7.58	5.71	7.35	2	1.6	1.96	Up	Carboxylesterase type B
Unigene5678_All	2696	5.48	18.76	17.01	21.07	1.78	1.63	1.94	Up	hypothetical protein MPH_13029
CL1188.Contig4_All	4955	9.3	2.35	0.89	1.33	−1.98	−3.39	−2.81	Down	Mg²⁺ transporter protein CorA-like/Zinc transport protein, partial
CL1201.Contig1_All	1401	294.62	87	45.55	103.27	−1.76	−2.69	− 1.51	Down	Ctr copper transporter
CL1240.Contig1_All	1071	1.84	0.01	0.01	0.29	−7.52	−7.52	−2.67	Down	Hypothetical protein CFIO01_01894
CL4468.Contig1_All	4397	74.92	25.48	30.42	27.28	−1.56	−1.3	−1.46	Down	Anoctamin/TMEM 16
Unigene1795_All	1309	5.33	1.8	1.29	0.87	−1.57	−2.05	−2.62	Down	Glycoside hydrolase family 5
Unigene2947_All	1216	2.88	0.9	0.66	0.51	−1.68	−2.13	−2.5	Down	ATPase P-type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Unigene3433_All	972	98.16	1.33	0.56	1.66	−6.21	−7.45	−5.89	Down	hypothetical protein MPH_09082
Unigene4109_All	3383	15.54	0.83	1.42	3.01	−4.23	−3.45	−2.37	Down	Integral membrane protein
Unigene5131_All	961	1090.02	8.49	3.77	3.46	−7	−8.18	−8.3	Down	hypothetical protein MPH_01777
Unigene64_All	3669	4.14	0.93	0.44	1.16	−2.15	−3.23	−1.84	Down	Fungal chitin synthase
Unigene924_All	2470	10.62	2.61	1.47	1.32	−2.02	−2.85	−3.01	Down	Ferric reductase transmembrane component 4 precursors

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