Skip to main content

Advertisement

Table 3 Annotation of differentially expressed genes from B.dothidea strains in NR database

From: De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)

Gene ID Length (nt) Expression log2FC Regulation model Nr-Annotation
Mock LW-CP LW-C LW-P LW-CP /Mock LW-C/Mock LW-P/Mock
CL1433.Contig1_All 2180 1.18 8.26 5.97 4.99 2.81 2.34 2.08 Up putative amino acid permease protein
CL1608.Contig2_All 3553 3.65 35.67 30.32 12.37 3.29 3.05 1.76 Up Sugar/inositol transporter
CL1856.Contig1_All 6267 0.01 1.9 0.18 0.59 7.57 4.17 5.88 Up Kelch repeat type 1
CL2868.Contig1_All 3689 0.01 2.98 6.95 0.46 8.22 9.44 5.52 Up Major facilitator superfamily
Unigene8027_All 1901 6.98 52.68 30.36 25.3 2.92 2.12 1.86 Up GTP-binding domain HSR1-related protein
CL1210.Contig8_All 2904 0.01 5.08 1.23 1.03 8.99 6.94 6.69 Up putative c6 transcription factor protein
CL1218.Contig1_All 3928 0.01 6.8 1.13 0.65 9.41 6.82 6.02 Up Acyltransferase ChoActase/COT/CPT
CL1266.Contig2_All 1880 2.64 9.75 12.76 5.98 1.88 2.27 1.18 Up CMP/dCMP deaminase zinc-binding protein
CL1272.Contig4_All 6904 0.01 6.24 6.28 2.32 9.29 9.29 7.86 Up AIG1-like protein
CL1316.Contig1_All 1801 3.17 12.97 6.53 23.62 2.03 1.04 2.9 Up Glutathione S-transferase transferase
CL1837.Contig3_All 1879 0.29 5.12 2.26 1.49 4.14 2.96 2.36 Up Hrf1
CL2854.Contig1_All 5786 0.63 3.61 2.03 2.25 2.52 1.69 1.84 Up Dopey
CL4079.Contig1_All 5893 0.01 1.48 1.12 0.28 7.21 6.81 4.81 Up Putative ABC transporter protein
CL4156.Contig1_All 3680 0.01 16.2 4.06 1.68 10.66 8.67 7.39 Up putative ubiquitin carboxyl-terminal hydrolase protein
CL54.Contig2_All 3595 0.01 4.58 1.8 0.64 8.84 7.49 6 Up Chitin synthase
CL558.Contig1_All 2880 0.5 2.84 1.8 1.55 2.51 1.85 1.63 Up Amino acid transporter transmembrane
Unigene1080_All 1950 1.89 7.58 5.71 7.35 2 1.6 1.96 Up Carboxylesterase type B
Unigene5678_All 2696 5.48 18.76 17.01 21.07 1.78 1.63 1.94 Up hypothetical protein MPH_13029
CL1188.Contig4_All 4955 9.3 2.35 0.89 1.33 −1.98 −3.39 −2.81 Down Mg2+ transporter protein CorA-like/Zinc transport protein, partial
CL1201.Contig1_All 1401 294.62 87 45.55 103.27 −1.76 −2.69 − 1.51 Down Ctr copper transporter
CL1240.Contig1_All 1071 1.84 0.01 0.01 0.29 −7.52 −7.52 −2.67 Down Hypothetical protein CFIO01_01894
CL4468.Contig1_All 4397 74.92 25.48 30.42 27.28 −1.56 −1.3 −1.46 Down Anoctamin/TMEM 16
Unigene1795_All 1309 5.33 1.8 1.29 0.87 −1.57 −2.05 −2.62 Down Glycoside hydrolase family 5
Unigene2947_All 1216 2.88 0.9 0.66 0.51 −1.68 −2.13 −2.5 Down ATPase P-type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Unigene3433_All 972 98.16 1.33 0.56 1.66 −6.21 −7.45 −5.89 Down hypothetical protein MPH_09082
Unigene4109_All 3383 15.54 0.83 1.42 3.01 −4.23 −3.45 −2.37 Down Integral membrane protein
Unigene5131_All 961 1090.02 8.49 3.77 3.46 −7 −8.18 −8.3 Down hypothetical protein MPH_01777
Unigene64_All 3669 4.14 0.93 0.44 1.16 −2.15 −3.23 −1.84 Down Fungal chitin synthase
Unigene924_All 2470 10.62 2.61 1.47 1.32 −2.02 −2.85 −3.01 Down Ferric reductase transmembrane component 4 precursors