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Table 1 Genetic relatedness of the small, medium and large genome segments of Lokern virus and its closest known relatives

From: Evidence that Lokern virus (family Peribunyaviridae) is a reassortant that acquired its small and large genome segments from Main Drain virus and its medium genome segment from an undiscovered virus

Virus Lokern virus
% nucleotide identity % amino acid identity
Small Medium Large N NSS aM L
Abbey Lake virus 70.9 59.8 71.4 73.4 64.0 55.0 76.5
Batai virus 79.5 68.7 73.1 88.4 90.1 71.5 80.7
Birao virus 78.3 b 87.6 85.0
Bozo virus 76.3 79.0 78.2
Bunyamwera virus 80.0 63.4 73.5 89.7 86.2 62.4 81.1
Cache Valley virus 83.5 72.5 76.1 89.3 94.1 78.4 85.5
Cholul virus 83.3 58.6 89.3 94.1 54.4
Fort Sherman virus 81.8 72.7 76.3 91.0 93.1 77.9 86.0
Germiston virus 71.1 59.3 73.8 67.0 54.7
Ilesha virus 79.6 67.4 73.4 86.7 85.2 67.0 80.2
Main Drain virus 99.0 59.0 99.0 99.6 100.0 53.9 99.0
Maguari virus 83.0 72.2 76.2 91.4 93.1 77.6 86.6
Mboke virus 78.3 86.3 84.2
Ngari virus 85.0 68.6 74.0 89.7 86.2 71.0 81.1
Northway virus 84.6 71.4 76.8 91.4 95.0 76.9 86.7
Playas virus 83.3 72.4 76.1 89.3 94.1 78.0 85.6
Potosi virus 83.2 59.1 75.5 89.3 94.1 54.4 84.8
Shokwe virus 81.0 90.1 88.1
Tensaw virus 82.4 70.4 76.5 91.4 88.1 74.8 86.1
Tlacotalpan virus 82.7 72.7 76.1 89.3 93.1 78.4 85.7
Xingu virus 78.8 86.3 84.2
  1. aAlignments were performed using the Gn-NSM-Gc polyprotein; bComplete sequence data not available; Genbank Accession Nos. used for the nucleotide sequence alignments are as follows: Abbey Lake virus (KJ710424.1, KJ710423.1, KJ710425.1), Bunyamwera virus (NC_001927.1, M11852.1, X14383.1), Batai virus (KU746869.1, KU746870.1, KU746871.1), Birao virus (AM711131.1), Bozo virus (AM711132.1), Cache Valley virus (KX100133.1, KX100134.1, KX100135.1), Cholul virus (EU879062.3, JN808310.1), Fort Sherman virus (KX100130.1, KX100131.1, KX100132.1), Germiston virus (M19420.1, M21951.1), Ilesha virus (KF234073.1, KF234074.1, KF234075.1), Main Drain virus (X73469.1, EU004187.1, MG652604), Maguari virus (KY910431.1, KY910430.1, KY910429.1), Mboke virus (AY593727.1), Ngari virus (KM507341.1, KM514677.1, KM507334.1), Northway virus (X73470.1, EU004188.1, MG544835), Playas virus (KX100121.1, KX100122.1, KX100123.1), Potosi virus (MF066370.1, MF066369.1, MF066368.1), Shokwe virus (EU564831.1), Tensaw virus (FJ943505.1, FJ943506.1, FJ943509.1), Tlacotalpan virus (KX100118.1, KX100119.1, KX100120.1) and Xingu virus (EU564830.1). Genbank Accession Nos. used for amino acid sequence alignments can be accessed by following the links in the Genbank entries listed above