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Table 1 Genetic relatedness of the small, medium and large genome segments of Lokern virus and its closest known relatives

From: Evidence that Lokern virus (family Peribunyaviridae) is a reassortant that acquired its small and large genome segments from Main Drain virus and its medium genome segment from an undiscovered virus

Virus

Lokern virus

% nucleotide identity

% amino acid identity

Small

Medium

Large

N

NSS

aM

L

Abbey Lake virus

70.9

59.8

71.4

73.4

64.0

55.0

76.5

Batai virus

79.5

68.7

73.1

88.4

90.1

71.5

80.7

Birao virus

78.3

b

87.6

85.0

Bozo virus

76.3

79.0

78.2

Bunyamwera virus

80.0

63.4

73.5

89.7

86.2

62.4

81.1

Cache Valley virus

83.5

72.5

76.1

89.3

94.1

78.4

85.5

Cholul virus

83.3

58.6

89.3

94.1

54.4

Fort Sherman virus

81.8

72.7

76.3

91.0

93.1

77.9

86.0

Germiston virus

71.1

59.3

73.8

67.0

54.7

Ilesha virus

79.6

67.4

73.4

86.7

85.2

67.0

80.2

Main Drain virus

99.0

59.0

99.0

99.6

100.0

53.9

99.0

Maguari virus

83.0

72.2

76.2

91.4

93.1

77.6

86.6

Mboke virus

78.3

86.3

84.2

Ngari virus

85.0

68.6

74.0

89.7

86.2

71.0

81.1

Northway virus

84.6

71.4

76.8

91.4

95.0

76.9

86.7

Playas virus

83.3

72.4

76.1

89.3

94.1

78.0

85.6

Potosi virus

83.2

59.1

75.5

89.3

94.1

54.4

84.8

Shokwe virus

81.0

90.1

88.1

Tensaw virus

82.4

70.4

76.5

91.4

88.1

74.8

86.1

Tlacotalpan virus

82.7

72.7

76.1

89.3

93.1

78.4

85.7

Xingu virus

78.8

86.3

84.2

  1. aAlignments were performed using the Gn-NSM-Gc polyprotein; bComplete sequence data not available; Genbank Accession Nos. used for the nucleotide sequence alignments are as follows: Abbey Lake virus (KJ710424.1, KJ710423.1, KJ710425.1), Bunyamwera virus (NC_001927.1, M11852.1, X14383.1), Batai virus (KU746869.1, KU746870.1, KU746871.1), Birao virus (AM711131.1), Bozo virus (AM711132.1), Cache Valley virus (KX100133.1, KX100134.1, KX100135.1), Cholul virus (EU879062.3, JN808310.1), Fort Sherman virus (KX100130.1, KX100131.1, KX100132.1), Germiston virus (M19420.1, M21951.1), Ilesha virus (KF234073.1, KF234074.1, KF234075.1), Main Drain virus (X73469.1, EU004187.1, MG652604), Maguari virus (KY910431.1, KY910430.1, KY910429.1), Mboke virus (AY593727.1), Ngari virus (KM507341.1, KM514677.1, KM507334.1), Northway virus (X73470.1, EU004188.1, MG544835), Playas virus (KX100121.1, KX100122.1, KX100123.1), Potosi virus (MF066370.1, MF066369.1, MF066368.1), Shokwe virus (EU564831.1), Tensaw virus (FJ943505.1, FJ943506.1, FJ943509.1), Tlacotalpan virus (KX100118.1, KX100119.1, KX100120.1) and Xingu virus (EU564830.1). Genbank Accession Nos. used for amino acid sequence alignments can be accessed by following the links in the Genbank entries listed above