Phylogenetic analysis of the wild-type strains of canine distemper virus circulating in the United States

Table 1 H gene divergence/% identity between WY-like strains

	S134 GA	S99 MS	S97 MS	S95 MS	S85 MS	S26 OH	S9 Al	S56 AL	S86 MS	S23 WV	S21 WV	S22 WV	S5 TN	S55 AL	S12 TN	S18 MO	S20 TX	S8 AL
S134 GA
S99 MS	99.72
S97 MS	99.61	99.79
S95 MS	99.67	99.85	99.85
S85 MS	99.46	99.64	99.54	99.59
S26 OH	99.26	99.38	99.28	99.33	99.13
S9 Al	99.36	99.54	99.44	99.49	99.28	99.54
S56 AL	99.36	99.54	99.44	99.49	99.28	99.54	99.69
S86 MS	99.61	99.69	99.59	99.64	99.43	99.18	99.33	99.33
S23 WV	98.95	99.08	98.97	99.02	98.82	99.18	99.23	99.23	98.87
S21 WV	99.05	99.18	99.08	99.13	98.92	99.28	99.33	99.33	98.97	99.9
S22 WV	99.05	99.18	99.08	99.13	98.92	99.28	99.33	99.33	98.97	99.79	99.9
S5 TN	98.79	98.92	98.82	98.87	98.66	99.02	99.07	99.07	98.81	99.43	99.43	99.33
S55 AL	99.33	99.47	99.36	99.41	99.2	99.47	99.63	99.95	99.25	99.25	99.25	99.25	99.09
S12 TN	98.84	98.97	98.87	98.92	98.72	99.08	99.13	99.13	98.81	99.08	99.08	99.08	99.07	99.15
S18 MO	96.79	96.97	96.87	96.92	96.71	96.97	97.12	97.12	96.8	96.97	96.97	96.97	96.86	97.12	96.97
S20 TX	97.14	97.26	97.26	97.26	96.95	97.18	97.48	97.41	97.03	97.03	97.1	97.18	97.03	97.42	96.95	98.17
S8 AL	97.44	97.54	97.54	97.54	97.21	97.54	97.67	97.67	97.34	97.54	97.54	97.54	97.47	97.83	97.34	97.15	97.33
S119 KS	96.91	96.97	96.97	97.1	96.84	97.1	97.22	97.22	96.84	96.97	96.97	97.1	97.1	97.23	97.22	96.59	96.09	96.84

Evaluation of strains detected in the US that cluster with a CDV strain previously identified from a domestic dog-breeding facility in Kansas in 2010¹⁹. Samples represented by assigned sample (S) number and state in which the animal was located

ISSN: 1743-422X