Table 2 Conservation percentage and mean p-distance for HVR2, complete SHseg and individual genomic regions within SHseg
group | genotype (no. of samples) | HVR2 | SHseg | individual SHseg genomic regions (max. Length in nt for HRSV A and HRSV B, respectively) | ||||
|---|---|---|---|---|---|---|---|---|
SH gene 5’ UTRa (84, 85) | SH coding (195, 198) | SH gene 3’ UTR (132, 130) | intergenic region (45, 44) | G gene 5’ UTR (15,15) | ||||
A | ON1 (34) | |||||||
a | 88.0 | 91.5 | 81.0 | 94.4 | 90.2 | 90.9 | 100 | |
b | 0.017 | 0.007 | 0.019 | 0.004 | 0.009 | 0.007 | 0 | |
NA1 (83) | ||||||||
a | 78.5 | 89.8 | 88.1 | 91.3 | 88.6 | 86.7 | 100 | |
b | 0.028 | 0.015 | 0.025 | 0.011 | 0.018 | 0.007 | 0 | |
overallb (120) | ||||||||
a | 67.3 | 79.4 | 71.4 | 85.1 | 76.5 | 71.1 | 100 | |
b | 0.038 | 0.018 | 0.029 | 0.012 | 0.023 | 0.013 | 0 | |
B | BA9 (77) | |||||||
a | 81.5 | 89.6 | 78.8 | 93.9 | 89.2 | 90.9 | 93.3 | |
b | 0.023 | 0.020 | 0.040 | 0.011 | 0.021 | 0.015 | 0.032 | |
overallc (78) | ||||||||
a | 78.8 | 87.5 | 76.5 | 92.9 | 88.5 | 79.5 | 93.3 | |
b | 0.023 | 0.020 | 0.040 | 0.011 | 0.021 | 0.017 | 0.032 | |