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Table 1 Relative length distribution of each validated contig for each virus in positive samples

From: Metagenomic analysis of the RNA fraction of the fecal virome indicates high diversity in pigs infected by porcine endemic diarrhea virus in the United States

Virus ID

< 10%

10–20%

20–30%

30–40%

40–50%

50–60%

60–70%

70–80%

80–90%

> 90%

PDCoV

64

5

1

0

0

0

1

0

0

2

Enterovirus

1035

143

24

7

1

2

0

1

0

0

Kobuvirus

638

76

36

13

6

10

1

2

1

3

Mamastrovirus

3880

362

128

71

61

11

7

10

4

6

Pasivirus

125

10

4

0

0

0

0

0

0

0

Posavirus

1269

137

43

16

9

9

6

1

4

7

Sapelovirus

793

92

20

7

4

2

0

1

0

1

Sapovirus

185

42

6

4

2

0

0

0

0

0

Teschovirus

113

23

5

6

1

1

0

0

0

0

  1. Each column shows the relative size range (contig length over average length of complete genomic) of the contigs for each virus. Each row shows the count of total contigs falling within each size range, for each virus, respectively. PEDV was exclude for analysis
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Virology Journal

ISSN: 1743-422X