Fig. 5
From: Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya
Maize streak virus (MSV) genome organization and alignment of de novo-assembled contigs. Labels are as in Fig. 2. a MSV genome organization. Open reading frames are represented by cylinders. Genomic DNA is represented by a solid line. Coordinates are based on reference sequence number AF329878.1. Large (LIR) and small (SIR) are represented by shaded boxes. Direction of transcription is indicated by arrows. Every sample categorized as infected contributed one representative contig. Shorter, redundant contigs were not illustrated. b Genome coverage after reference based assembly using Bowtie v2 for one representative sample