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Table 3 Comparison of amino acid sequences within and between vesiviruses

From: Canine caliciviruses of four serotypes from military and research dogs recovered in 1963−1978 belong to two phylogenetic clades in the Vesivirus genus

A.
RdRP FCV VESV SMSV CaCV CaCV I CaCV II
FCV 92.5 ± 1.9      
VESV 63.4 ± 1.0 93.4 ± 1.6     
SMSV 59.2 ± 1.0 64.9 ± 1.1 85.5 ± 6.6    
CaCV 57.5 ± 2.5 64.0 ± 2.3 73.6 ± 3.4 85.2 ± 13.3   
CaCV I 54.1 ± 0.9 60.9 ± 0.6 69.0 ± 1.5   97.4 ± 0.5  
CaCV II 59.2 ± 0.7 65.6 ± 0.7 75.9 ± 0.7   72.0 ± 0.7 98.7 ± 0.5
B.
VP1 FCV VESV SMSV CaCV CaCV I CaCV II
FCV 87.4 ± 2.4      
VESV 46.1 ± 0.8 74.2 ± 6.4     
SMSV 38.4 ± 1.2 38.7 ± 1.8 66.4 ± 15.5    
CaCV 37.4 ± 0.8 38.0 ± 1.0 42.3 ± 0.8 78.8 ± 10.5   
CaCV I 36.7 ± 0.5 39.1 ± 0.5 42.6 ± 0.5   92.0 ± 2.9  
CaCV II 37.7 ± 0.8 37.5 ± 0.8 42.2 ± 0.9   67.9 ± 0.9 87.5 ± 3.2
  1. Protein sequences of (A) RNA-dependent RNA polymerase (RdRP) and (B) major capsid protein (VP1) were respectively aligned with MUSCLE program [16]. Data in table are average amino acid identities and standard deviations. GenBank accession numbers of the sequences are shown in Additional file 3: Table S1. FCV, feline calicivirus. VESV, vesicular exanthema. SMSV, San Miguel sea lion virus (SMSV). CaCV, canine calicivirus. CaCV I and II are types I and II of CaCV