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Table 1 Primers used for amplification of virus sequences of symptomatic vegetables from Dominican Republic

From: Identification and genome analysis of tomato chlorotic spot virus and dsRNA viruses from coinfected vegetables in the Dominican Republic by high-throughput sequencing

Primer Name

Sequence 5ʼ - 3ʼ

Tm [°C]

Anneling Temperature [°C]

Amalga – Fa

TGG GTA TCG ACA AGC GCT AC

60.5

55

Amalga – Ra

ACA TGT CGA AGG CCT CCT TG

60.5

55

Bell – Fb

CGC TTC GAG CAT AAA AGC CC

60.5

55

Bell – Rb

TGG CTT GCG CTT TTG TGT AC

58.4

55

Pep70 – Fc

CAC CCG CAC ACA ATT AAC GG

60.5

55

Pep70 - Rc

ACA CAT CTT CGG TCC GAC AC

60.5

55

Pep126 – Fd

ACG CCC CCT ATA ACG CAA AA

58.4

55

Pep126 – Rd

AAT GTC GCA AGG GCC CAT AA

58.4

55

  1. Melting temperature (Tm) and annealing temperature in PCR reaction are shown
  2. aPrimers to amplify Southern tomato virus (STV)
  3. bPrimers to amplity Bell pepper endornavirus (BPEV)
  4. cPrimers to amplity Pepper cryptic virus 2 (PCV-2) RNA 1
  5. dPrimers to amplify Pepper cryptic virus 2 (PCV-2) RNA 2