Skip to main content

Table 4 DEGs involved in DNA repair

From: Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection

Category or gene ID Homologous functiona Species FCb
DNA repair
 c45190_g1 DNA ligase aden and DNA ligase OB domain Trichuris trichiura −1.5
 c39710_g1 DNA polymerase I Trichuris trichiura −1.8
 c23489_g3 DNA polymerase III subunit alpha Capitella teleta −1.7
 c30501_g2 DNA polymerase III subunit epsilon Capitella teleta 2.0
 c20205_g4 ATP-dependent DNA helicase srs2-like Plutella xylostella 3.1
 c20205_g1 ATP-dependent DNA helicase srs2-like Plutella xylostella 2.6
 c4255_g1 MutS protein-like protein 4, partial Zootermopsis nevadensis −3.7
 c21553_g1 DNA glycosylase Lasius niger −2.4
 c37356_g1 Uracil-DNA glycosylase Capitella teleta −2.1
Cell cycle checkpoints
 c32780_g1 RAD50-interacting protein 1 Zootermopsis nevadensis 1.0
 c34907_g2 Cell cycle checkpoint protein RAD1 isoform X2 Cerapachys biroi 1.0
 c23966_g1 Transformation/transcription domain protein Zootermopsis nevadensis 2.5
 c15302_g2 Transformation/transcription domain protein Acyrthosiphon pisum 3.6
E3 ubiquitin ligase
 c37868_g1 G2/M phase-specific E3 ubiquitin-protein ligase Danio rerio 2.4
 c28057_g2 G2/M phase-specific E3 ubiquitin-protein ligase Saccoglossus kowalevskii 1.6
 c14143_g1 G2/M phase-specific E3 ubiquitin-protein ligase Danio rerio 1.7
 c37987_g1 G2/M phase-specific E3 ubiquitin-protein ligase Gallus 2.9
 c50210_g1 G2/M phase-specific E3 ubiquitin-protein ligase Crassostrea gigas 1.6
 c35060_g2 E3 ubiquitin-protein ligase HUWE1 Daphnia pulex 1.2
 c13801_g1 Hect E3 ubiquitin ligase Pediculus humanus 1.1
 c27270_g1 E3 ubiquitin-protein ligase BRE1-like Diaphorina citri 1.1
 c29883_g1 NEDD4-like E3 ubiquitin-protein ligase WWP1 Zootermopsis nevadensis 1.0
 c31381_g2 Apoptosis-resistant E3 ubiquitin protein ligase 1 Athalia rosae 1.0
  1. Displayed are the fold changes of DEGs involved in DNA repair of viruliferous guts in comparison to nonviruliferous guts. log2 ratio ≥ 1 and q ≤ 0.05 are used as the threshold
  2. aThe function of the homologous gene
  3. bFC, fold change (log2 ratio) of gene expression