Table 4 Sequence results of amplified PCR fragments
From: Monitoring of Poyang lake water for sewage contamination using human enteric viruses as an indicator
Site | Blast | Matched DNA | E value | Identity | Sequence |
|---|---|---|---|---|---|
3.2 | KC911703.1 | Norovirus Hu/GII/NEC-365/THA/ | 5.00E-10 | 98% | ATAATCATTACCCAAGTTTAAATGAAGAGGAGACGCATCTGGCTCCCAGTTTTGTGAAT GAAGATGGC |
1.2 | EU151450.1 | Swine vesicular disease virus strain SVDV Itl. 1–92 | 5.00E-33 | 96% | CCATGGCTAGGACTGACTACTTTGATACGGCTAATCCTCACTCGCGTGAGCAGATACCCA CACACCAGTGGGCAGTCTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGG |
1.3; 2.4 | GU236215.1 | Human echovirus 11 isolate 39,351.82 5’ UTR | 6.00E-42 | 100% | AAGGTGAGGACCAGTACTCCTGAATGCGGCTAATCCTAACTGCGGAGCAGATACCCAC ACACCAGTGGGCAGTCTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGG |
1.1 | KX458103.1 | Norovirus GI.9 strain | 1.00E-09 | 98% | GGGGGTGGCGTCTAAGACATCTCCTACCCGATTATGTAAATGATGATGGCGTCTAAGGA |
2.6 | KF303071.1 | Human adenovirus 41 isolate 10–4851 | 2.00E-31 | 98% | TGGGAACCTGCCTTAAGTCGATATCTCGTGGCGCGGGCAAACTGCACCAGGCCCGGA CTCAGATACTCCGAGGCGTCCTGCCCGGCGATGTGCATGTAAGACCACTGGGGCAG |
2.5 | GU236272.1 | Human echovirus 25 isolate 06.048.1621 5’ UTR | 1.00E-40 | 99% | GAGGACGAACACAGACCAACCGCCCACTGGTGTGTGGGTATCTGCTCCGCAGTTAGGAT TAGCCGCATTCAGGGGCCGGAGGATTACCAATTAGCTCAATAGACTCTTCACACCATGTAA |
2.5; 4.6; 4.5; 4.4 | LT628548.1 | Human adenovirus 41 partial Hexon gene for Hexon gene pseudogene, strain Muonio/11V1867_3/2012/FIN | 5.00E-32 | 97% | TAGGCCTTGGTCTTAATTCGATATCTGGTGGCGCGGGCAAACTGCACCAGGCCCGGACT CAGATACTCCGAGGCGTCCTGCCCGGCGATGTGCATGTAAGACCACTGGGGCAG |
3.2; 5.3 | JX412882.1 | Human adenovirus 41 isolate CR6724 hexon gene | 5.00E-37 | 100% | TGCTGGCGAGTCGTATCGGTGGCGCGGGCAAACTGCACCAGGCCCGGACTCAGATA CTCCGAGGCGTCCTGCCCGGCGATGTGCATGTAAGACCACTGGGGCACA |
3.3; 4.4 | AB112114.1 | Human norovirus Saitama gene for RNA dependent RNA polymerase, | 3.00E-15 | 100% | AGGGGCCGTGATTGCGATCTCCTGTCCACAAGCTCAAGTCATGGAACCGCATCCAGCGA |
3.3 | JX412882.1 | Human adenovirus 41 isolate CR6724 hexon gene | 5.00E-37 | 100% | TAGACGGCCGAGTCGTATCGGTGGCGCGGGCAAACTGCACCAGGCCCGGACTCAGATA CTCCGAGGCGTCCTGCCCGGCGATGTGCATGTAAGACCACTGGGGCACA |
4.6 | KX907729.1 | Norovirus Hu/USA/2011/GI.P7_GI.7/CS5567 | 5.00E-13 | 98% | GGTAGGCGTCTGATCGCACTCTCCTACCCGATTATGTAAATGATGATGGCGTCTAAGGA |
4.5 | AB504701.1 | Norovirus sewage/GI.7/Toyama/SW0703–10/2007/JP genes | 1.00E-15 | 100% | ACGACTGTGATTGCGATCTCCTGTCCACAAGCTCAAGTCATGGAAACGCATCCAGCGA |
3.1 | JX439815.1 | Norovirus Hu/GII/Seoul1055/KOR/2010 | 3.00E-12 | 98% | TGGTCCGACTCCGGCGCCGACAATCGGGCGCTCCGCAATCTGGCTCCCAGTTTTGTGA ATGAAGATGGCGTCGACT |
4.5 | KJ489414.1 | Human coxsackievirus B3 strain 2679 | 1.00E-40 | 96% | GGTCATTCGACGACTGCGCACTGGTGTGTGGGTATCTGCTCCGCAGTTAGGATTAGCCG CATTCAGGGGCCGGAGGATTACCAATTAGCTCAATAGACTCTTCACACCATGTAGA |
5.1; 5.2 | LC147086.1 | Norovirus Hu/GI/Toyama/outbreakApr3741 /2010/JP | 9.00E-10 | 100% | GGCATGCGTCTGACGCATCTCCTACCCGATTATGTAAATGATGATGGCGTCTAAGAGA |
5.1 | KC911664.1 | Norovirus Hu/GII/CC-685/THA/2006 RNA polymerase and capsid genes | 2.00E-14 | 98% | TTGCCCCAGACGGGCATCGGTAGGTGGGGCGATCGCATCTGGCTCCCAGTTTTGTGA ATGAAGATGGCGTCGA |
6.4 | KX446506.1 | Norovirus GII strain GII/Hu/NL/2010/GII | 1.00E-21 | 97% | CAACGGATCTGAGCCGTGGGAGGGCGATCGCATCTGGCTCCCAGTTTTGTGAATGAAGATGGCGTCGA |
6.6; 7.1; 8.6 | JX976770.1 | Human coxsackievirus B3 isolate CVB3SD2012CHN | 1.00E-39 | 99% | ACCTTGCCGTACACAGTACACTGTATGCGGCTAATCCTAACTGCGGAGCAGATACC CACACACCAGTGGGCAGTCTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGAC |