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Table 4 Comparison between predicted protein sequences of the IT bat CoVs and prototype clade c betacoronaviruses and MERS related strains

From: Detection and full genome characterization of two beta CoV viruses related to Middle East respiratory syndrome from bats in Italy

 

% Amino acid identitiesa

ORF

IT Bat CoVs

MERS-CoVb

HKU4c

HKU5d

EriCoVe

NeoCovf

BtVs-BetaCoV/SC2013g

ORF1ab

99.4

81.3-81.5

73.5–73.6

75.9–76

74.5–74.7

81.6

84.6–84.7

Spike

99

68.5–68.8

70.4–70.6

73.8–74.3

57.8–58.1

60.9

79.6

ORF3

97.1

48.5–49.5

39.6–40.7

46.5–47.5

28.6

51.5

53.4

ORF4a

97.9

53.7

44.2

50–52.2

43.2–43.4

54.7

67

ORF4b

98

43.9–46.4

29.9–30.3

31.1–32

39.9–40.4

47.4

56

ORF5

98.7

64.3–64.7

47.6

54.5–55

52.9

62.9

74

E

100

86.6

70.7

69.5

78

91.5

91.5

M

99.5

84.9–85.8

81.7–82.1

82.1–82.6

83.9–84.4

84.9

87.2

N

99.5

81.4–81.9

73–73.4

71.8

74.4–74.6

83.7

83.4

ORF8b

96.9

63.4–67

49.2–52.4

49.5–52.1

47.9–49.5

63–65.1

64–65.6

Concatenated domains

99.3

79

74

74.6

74.4

79.2

82.3

  1. aCalculated with MEGA7 using a pairwise deletion option
  2. bGenBank accession number JX869059, KC164505, KC776174, KF186567, KF192507, KF600612, KF600620, KJ477102
  3. cGenBank accession number EF065505, EF065506, EF065507, EF065508, DQ648794
  4. dGenBank accession number EF065509, EF065510, EF065511, EF065512
  5. eGenBank accession number KC545386, KC545383
  6. fGenBank accession number KC869678
  7. gGenBank accession number KJ473821