Gene, chromosome positiona, allele (major/minor) | SNPs IDb | NON-OBI | MAF (%) | OBI | MAF (%) | Testing of mode of inheritance | NON-OBI vs OBI | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Genotype frequency (%) | Genotype frequency (%) | |||||||||||
P-valuec | OR (95%CI)d | |||||||||||
CC/GG | CT/GA | TT/AA | CC/GG | CT/GA | TT/AA | |||||||
HLA-DPA1, 33,033,022, C/T | rs3077 | 43 (41) | 53 (51) | 8 (8) | 33 | 2 (12) | 10 (59) | 5 (29) | 59 | Additive (2 T/T-C/T vs C/C) | 0.0015 | 3.87 (1.58–9.49) |
Dominant (C/C vs C/T-T/T) | 0.0067 | 6.12 (1.30–28.85) | ||||||||||
Recessive (C/C-C/T vs T/T) | 0.016 | 5.56 (1.45–21.29) | ||||||||||
HLA-DPB1, 33,045,558, G/A | rs3135021 | 54 (53) | 37 (37) | 10 (10) | 28 | 9 (53) | 7 (41) | 1 (6) | 26 | Additive (2A/A-G/A vs G/G) | 0.8 | 0.90 (0.41–2.01) |
Dominant (G/G vs G/A-A/A) | 0.99 | 1.01 (0.35–2.87) | ||||||||||
Recessive (G/G-G/A vs A/A) | 0.54 | 0.54 (0.06–4.53) | ||||||||||
HLA-DPB1, 33,054,861, G/A | rs9277535 | 39 (38) | 50 (48) | 15 (14) | 38 | 4 (24) | 11 (65) | 2 (12) | 44 | Additive (2A/A-G/A vs G/G) | 0.56 | 1.26 (0.58–2.72) |
Dominant (G/G vs G/A-A/A) | 0.28 | 1.89 (0.57–6.33) | ||||||||||
Recessive (G/G-G/A vs A/A) | 0.76 | 0.79 (0.16–3.89) | ||||||||||
HLA-DPB1, 33,060,118, C/T | rs2281388 | 70 (67) | 24 (23) | 11 (1) | 22 | 13 (76) | 3 (18) | 1 (6) | 15 | Additive (2 T/T-C/T vs C/C) | rs2281388 deviated from Hardy–Weinberg Equilibrium because the genotype distribution was skewed | |
Dominant (C/C vs C/T-T/T) | ||||||||||||
Recessive (C/C-C/T vs T/T) |