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Table 3 Recombination events identified by the RDP4 program

From: Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus

  

Breakpoint position

 

Potential Parental sequences

Score for five detection methods in RDP4

RNA segment

Event

Begin

End

Recombinant sequences

Major

Minor

RDP

GENECOV

MaxChi

Chimaera

SiScan

ORF 1

1

9

880

ISRAEL

KE Maize

Unknown

7.1e-38

6.4e-38

2.7e-13

3.1e-20

1.7e-28

 

1

9

880

KE Aphid P7

KE Maize

Unknown

7.1e-38

6.4e-38

2.7e-13

3.1e-20

1.7e-28

 

1

9

880

KE Aphid P9

KE Maize

Unknown

7.1e-38

6.4e-38

2.7e-13

3.1e-20

1.7e-28

 

2

262

861

E. Timor

KE Maize

Unknown

6.8e-07

4.1e-06

1.4e-04

6.2e-05

6.1e-14

 

3

879

3192

CHINA

S. Africa

Spain

6.4e-05

–

2.4e-22

1.6e-17

7.2e-68

ORF 2

1

130

645

CHINA

KE Aphid P9

E. Timor

5.9e-22

1.1e-07

6.5e-03

8.0e-12

2.1e-06

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Virology Journal

ISSN: 1743-422X