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Fig. 2 | Virology Journal

Fig. 2

From: Genetic analysis of porcine circovirus type 2 from pigs affected with PMWS in Chile reveals intergenotypic recombination

Fig. 2

Recombination analysis. a Similarity plot generated by SIMPLOT software based on 462 nt of ORF2 sequence using B2/2005 as query sequence and representative parent sequence of genotypes PCV2d (red) and PCV2a (blue) (JX535296 and AY180397, respectively). A PCV1 isolate was used as outgroup (green). The analysis was performed with a window size of 100 nt and a step size of 20 nt. b BootScan analysis and potential breakpoints for B2/2005 predicted by RDP3 software

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