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Table 2 Estimates of genetic differentiation among sites (F ST) within each region

From: The genetic structure of Turnip mosaic virus population reveals the rapid expansion of a new emergent lineage in China

Gene

Parameter

WF between WF

TA between TA

WF between TA

WF between CC

TA between CC

CC between CC

CP

Ks(P-value)

3.16314

(1.0000)

3.12325

(1.0000)

3.14501

(0.1200)

3.01985

(0.0080**)

2.90505

(0.0120*)

2.41801

(1.0000)

Z (P-value)

1935.22093

(1.0000)

1367.97222

(1.0000)

1618.33343

(0.2990)

740.62579

(0.0080**)

534.81963

(0.0060**)

143.22727

(1.0000)

Snn (P-value)

0.08081

(1.0000)

0.12416

(1.0000)

0.66143 **

(0.0030)

0.88492

(0.0000***)

0.85305

(0.0000***)

0.10000

(1.0000)

F ST

−0.02326

−0.02778

−0.00436

0.15467

0.15485

−0.09091

Nm

−11.00

−9.25

−57.56

1.37

1.36

−3.00

UTR

Ks*(P-value)

1.19299

(1.0000)

0.96193

(1.0000)

1.08658

(0.5460)

0.94143

(0.0570) ns

1.13222

(0.0420*)

0.88305

(0.9280) ns

Z (P-value)

1844.07143

(1.0000)

1362.22222

(1.0000)

1581.52519

(0.4120)

552.71858

(0.0680) ns

723.74704

(0.0470*)

140.95455

(1.0000) ns

Snn (P-value)

0.34906

(1.0000)

0.39139

(1.0000)

0.52678

(0.1430)

0.68796

(0.0230*)

0.69754

(0.0780) ns

0.31111

(1.0000) ns

F ST

−0.02381

−0.02778

−0.01268

0.08893

0.11459

−0.09091

Nm

−10.75

−9.25

−19.96

2.56

1.83

−3.00

  1. WF isolates from Weifang of Shandong province, TA isolates from Tai’an of Shandong province, CC isolates from Changchun of Jilin province
  2. ns not significant; *, 0.01 < P < 0.05; **, 0.001 < P < 0.01; ***, P < 0.001. Determined using 1000 permutations