No. | Sample ID | Type of sample | Accession Numbera | Subtype/ pathotype | PCR results (cq value) | |||
---|---|---|---|---|---|---|---|---|
M1.2 | LP H7 | HP H7 Italy | HP H7 Ems | |||||
1 | A/duck/Potsdam/15/1980 | I | AJ704797 | H7N7 LP | 17,03 | NEG | NEG | NEG |
2 | A/duck/Potsdam/13/1980 | I | SA | H7N7 LP | 17,55 | NEG | NEG | NEG |
3 | A/swan/Potsdam/64/1981 | I | AM922155 | H7N7 LP | 20,07 | NEG | NEG | NEG |
4 | A/turkey/Germany/R11/2001 | I | AJ704812 | H7N7 LP | 18,89 | 12,74 | NEG | NEG |
5 | A/mallard/NVP/1776–80/2003 | I | NAV | H7N3 LP | 25,3 | 16,41 | NEG | NEG |
6 | A/mallard/NVP/41/2004 | I | SA | H7N1 LP | 15,44 | 12,49 | NEG | NEG |
7 | A/mallard/Föhr/Wv190/2005 | I | NAV | H7N7 LP | 27,35 | 24,10 | NEG | NEG |
8 | A/teal/Föhr/Wv180/2005 | I | NAV | H7N2 LP | 14,28 | 10,76 | NEG | NEG |
9 | A/teal/Föhr/Wv177/2005 | I | AM933237 | H7N7 LP | 24,41 | 21,76 | NEG | NEG |
10 | A/mallard/Germany/R721/2006 | I | SA | H7N7 LP | 31,38 | 27,31 | NEG | NEG |
11 | A/graylag goose/Germany/R752/2006 | I | AM933236 | H7N7 LP | 26,15 | 17,27 | NEG | NEG |
12 | A/mallard/Germany/R756/2006 | I | SA | H7N4 LP | 24,81 | 24,13 | NEG | NEG |
13 | A/mute swan/Germany/R57/2006 | I | EPI492518 | H7N7 LP | 27,73 | 24,20 | NEG | NEG |
14 | A/mute swan/Germany/R901/2006 | I | EPI359695 | H7N1 LP | 23,14 | 20,08 | NEG | NEG |
15 | A/swan/Germany/736/2006 | I | EPI492517 | H7N4 LP | 15,39 | 14,07 | NEG | NEG |
16 | A/common pochard/Germany/R916/2006 | I | SA | H7N7 LP | 19,03 | 20,32 | NEG | NEG |
17 | A/duck/Germany/R3129/2007 | I | SA | H7N7 LP | 15,34 | 11,59 | NEG | NEG |
18 | A/sentinel-duck/Germany/SK207R/2007 | I | NAV | H7N3 LP | 27,64 | 22,09 | NEG | NEG |
19 | A/mallard/Sko212-219Â K/2007 | I | SA | H7N3 LP | 25,97 | 21,04 | NEG | NEG |
20 | A/guineafowl/Germany/R2495/2007 | I | AM930528 | H7N3 LP | 29,58 | 27,14 | NEG | NEG |
21 | A/mallard/Germany/R192/2009 | I | SA | H7N7 LP | 14,65 | 13,28 | NEG | NEG |
22 | A/turkey/Germany/R655/2009 | F | EPI302173 | H7N7 LP | 13,34 | 11,76 | NEG | NEG |
23 | A/nandu/Germany/AR142/2013 | F | SA | H7N7 LP | 28,35 | 28,90 | NEG | NEG |
24 | A/turkey/Germany/AR502/2013 | F | SA | H7N7 LP | 18,67 | 19,12 | NEG | NEG |
25 | A/turkey/Germany/AR618/2013 | F | NAV | H7Nx LP | 16,11 | 16,20 | NEG | NEG |
26 | A/chicken/Germany/AR909/2013 | F | SA | H7Nx LP | 35,59 | NEG | NEG | NEG |
27 | A/turkey/Germany/AR979/2013 | F | NAV | H7Nx LP | 25,59 | 21,79 | NEG | NEG |
28 | A/environment/Germany/AR1251/2013 | F | NAV | H7N LP | 21,31 | 14,93 | NEG | NEG |
29 | A/chicken/Germany/AR929/2015 | F, EL | SA | H7N7 LP | 30,39 | 30,02 | NEG | NEG |
30 | A/chicken/Germany/AR930/2015 | F, EL | SA | H7N7 LP | 30,39 | 35,77 | NEG | NEG |
31 | A/chicken/Germany/AR934/2015 | F, EL | SA | H7N7 LP | 30,07 | 32,88 | NEG | NEG |
32 | A/chicken/Germany/AR943/2015 | F, EL | SA | H7N7 LP | 30,07 | 32,70 | NEG | NEG |
33 | A/chicken/Germany/AR944/2015 | F, EL | SA | H7N7 LP | 30,07 | 31,03 | NEG | NEG |
34 | A/chicken/Germany/AR945/2015 | F, EL | SA | H7N7 LP | 29,9 | 33,18 | NEG | NEG |
35 | A/chicken/Germany/AR946/2015 | F, EL | SA | H7N7 LP | 29,9 | 33,32 | NEG | NEG |
36 | A/duck/Germany/AR234/1/2016 | F | SA | H7N7 LP | 33,42 | 35,43 | NEG | NEG |
37 | A/duck/Germany/AR2112/2016 | F | NAV | H7N7 LP | 36,17 | NEG | NEG | NEG |
38 | A/duck/Germany/AR2868/2016 | F | NAV | H7N7 LP | 35,3 | NEG | NEG | NEG |
39 | A/FPV/Rostock/45/1934 | I | CY077420 | H7N1 HP | 17,25 | NEG | NEG | 13,94 |
40 | A/chicken/Germany/“Taucha“/1979 | I | SA | H7N7 HP | 14,25 | NEG | NEG | 10,63 |
41 | A/chicken/Germany/R28/2003 | I | AJ704813 | H7N7 HP | 14,77 | NEG | NEG | NEG |
42 | A/FPV/dutch/1927 | I | NAV | H7N1 HP | 16,52 | NEG | NEG | 32,14 |
43 | A/chicken/Germany/AR1385/2015 | F, EL | SA | H7N7 HP | 18,76 | NEG | NEG | 19,01 |
44 | A/chicken/Germany/AR1413/2015 | F, EL | SA | H7N7 HP | 29,9 | NEG | NEG | 35,48 |
45 | A/chicken/Germany/AR1488/1/2015 | F, EL | SA | H7N7 HP | 29,31 | NEG | NEG | 22,72 |
46 | A/environment/Germany/AR1536/2015 | F, EL | SA | H7N7 HP | 29,38 | NEG | NEG | 21,18 |
47 | A/environment/Germany/AR1537/2015 | F, EL | SA | H7N7 HP | 29,38 | NEG | NEG | 25,7 |
48 | A/environment/Germany/AR1539/2015 | F, EL | SA | H7N7 HP | 29,38 | NEG | NEG | 22,19 |
49 | A/environment/Germany/AR1540/2015 | F, EL | SA | H7N7 HP | 29,38 | NEG | NEG | 24,69 |
50 | A/environment/Germany/AR1541/2015 | F, EL | SA | H7N7 HP | 29,38 | NEG | NEG | 26,35 |
51 | A/environment/Germany/AR1546/2015 | F, EL | SA | H7N7 HP | 30,12 | NEG | NEG | 25,19 |
52 | A/turkey/Italy/472/1999 | I | AJ704811 | H7N1 LP | 15,24 | 9,80 | NEG | NEG |
53 | A/chicken/Italy/473/1999 | I | EPI624438 | H7N2 LP | 13,73 | 10,71 | NEG | NEG |
54 | A/turkey/Italy/2043/2003 | I | CY022613, CY022615 | H7N3 LP | 24,34 | 21,45 | NEG | NEG |
55 | A/duck/Italy/636/2003 | I | NAV | H7N3 LP | 22,05 | 20,49 | NEG | NEG |
56 | A/chicken/Brescia/19/2002 | I | AM922154 | H7N1 HP | 16,59 | NEG | NEG | NEG |
57 | A/hen/Italy/444/1999 | I | AJ704810 | H7N1 HP | 16,22 | NEG | 18,02 | NEG |
58 | A/broiler/Italy/445/1999 | I | AJ580353 | H7N1 HP | 17,02 | NEG | 16,35 | NEG |
59 | A/turkey/Ireland/PV8/1995 | I | AJ704799 | H7N7 LP | 16,19 | 13,07 | NEG | NEG |
60 | A/houbara/Dubai/AR433/2014 | I | SA | H7N1 LP | 16,81 | 13,51 | NEG | NEG |
61 | A/houbara/Dubai/AR434/2014 | I | SA | H7N1 LP | 14,67 | 11,27 | NEG | NEG |
62 | A/houbara/Dubai/AR435/2014 | I | SA | H7N1 LP | 15,47 | 12,66 | NEG | NEG |
63 | A/houbara/Dubai/AR436/2014 | I | SA | H7N1 LP | 12,23 | 9,23 | NEG | NEG |
64 | A/houbara/Dubai/AR437/2014 | I | SA | H7N1 LP | 16,1 | 13,35 | NEG | NEG |
65 | A/houbara/Dubai/AR438/2014 | I | SA | H7N1 LP | 13,71 | 10,08 | NEG | NEG |
66 | A/peregrine falcon/Dubai/AR439/2014 | I | SA | H7N1 LP | 13,79 | 26,82 | NEG | NEG |
67 | A/francolin/Dubai/AR440/2014 | I | SA | H7N2 LP | 15,85 | 17,84 | NEG | NEG |
68 | A/wild bird/Dubai/AR3452/2014 | F | SA | H7N1 LP | 16,18 | 14,57 | NEG | NEG |
69 | A/alexandria tyrode/T145/1948 | I | SA | H7N1 HP | 14,48 | NEG | NEG | 10 |
70 | A/duck/Alberta/48/1976 | I | SA | H7N3 LP | 15,8 | 14,08 | NEG | NEG |
71 | A/turkey/Ontario/18–1/2000 | I | AF497552 | H7N1 LP | 28,61 | NEG | NEG | NEG |
72 | A/mallard/Alberta/8734/2007 | I | AM933238 | H7N3 LP | 18,63 | NEG | NEG | NEG |
73 | A/chicken/BritishColumbia/CN-06/2004 | I | KP055066 | H7N3 HP | 16,42 | NEG | NEG | NEG |
74 | A/chicken/BritishColumbia/CN-07/2004 | I | KP055076 | H7N3 HP | 24,71 | NEG | NEG | NEG |
75 | A/Anhui/1/2013 | I | AHZ60096 | H7N9 LP | 11,79 | 9,94 | NEG | NEG |