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Table 1 Primers used for PRRSV genome amplification. The primers for amplifying PRRSV genome were listed in Table 1

From: Genetic characterization of 11 porcine reproductive and respiratory syndrome virus isolates in South China from 2014 to 2015

Primers Name

Sequence(5′-3′)

Positiona

PRRSV1F

ATGACGTATAGGTGTTGGCT

1–20

PRRSV1R

GTCGCACCAGAGCGTGCTTTC

1357–1377

PRRSV1F

CAGAATCAGGGTTGAGCCCAAT

1255–1276

PRRSV1R

CTGCCCAGGCCATCATTTCTGAA

2551–2573

PRRSV2F

CCACTGGACTTGGCCCGCGAC

2451–2471

PRRSV2R

CTGAAGGCAGCAAATCAGTGA

3780–3800

PRRSV3F

CCGGTCTGCGACCAACCTGCC

3680–2700

PRRSV3R

GAAAATACACCCAAGAGGGGAG

4029–4050

PRRSV4F

CACACCTCTTCAAATCTGACAG

3921–3942

PRRSV4R

CGAAGGCATATTTACAGAAATC

5368–5389

PRRSV5F

CCCTTACCTGGTTGCTTTGTGT

5280–5301

PRRSV5R

GTAACGGATGCCCTTGAGTTGC

6521–6542

PRRSV6F

GGATGTTTGTGCTATCTTGGCT

6378–6399

PRRSV6R

GCGGCTAGCAGTTTAAACACTGC

7684–7706

PRRSV7F

GAGCAAGCCCTTGGTATGATGA

7583–7604

PRRSV7R

CAAGGCACCTGCCTAAAACCGGA

8844–8866

PRRSV8F

CGTTGAGTGGTGTCACCCAGGG

8756–8777

PRRSV8R

TTCCCTCCTGGATGAAGCAGCG

10,281–10,302

PRRSV9F

GGCTTTGGGGACGTGCCGGTTC

10,164–10,185

PRRSV9R

AACTGATTCCTTGGGAAGGAAG

11,400–11,421

PRRSV110F

CTGAGTCCCTCCCACATGCCTT

11,312–11,333

PRRSV110R

AAGTACTATTATACACTATG

12,613–12,632

PRRSV11F

TGGATGTGGTGGCTCATTTTC

12,498–12,518

PRRSV11R

CCCCAACATACTTGAACATTCA

13,776–13,797

PRRSV12F

CCAACATGTCAAGGAGTTTAC

13,646–13,666

PRRSV12R

CTTTCGCTGCTTGCCGTTGTTA

14,898–14,919

PRRSV13F

TACGGTTAACGGCACATTGGTG

14,798–14,819

PRRSV13R

d(T)20AATTTCGGCCGCATGG

15,395–15,432

  1. aNumbers represents the nucleotide position within the genome of CH-1a (GenBank accession number: AY032626)