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Table 4 Abundance of potato ncRNAs targeted by Potato virus Y-derived vsiRNAs

From: The effects of potato virus Y-derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

PVY-N library PVY-NTN library PVY-O library
Target ncRNA transcript family Target abundance Target ncRNA transcript family Target abundance Target ncRNA transcript family Target abundance
MIR821 1292 MIR821 563 MIR821 1309
28S RRNA 344 28S RRNA 370 U5 305
18S RRNA 271 18S RRNA 142 28S RRNA 210
SNOR71 195 SNOR71 122 18S RRNA 206
TRNA-MET 43 TRNA-MET 44 SNOR71 144
U2 39 U2 40 U2 26
SNORD25 29 SNORD25 29 U1 24
MIR-395 27 U1 29 U6 17
U5 22 SNOSNR60_Z15 19 PLANT_U3 16
ACEA_U3 19 MIR-395 19 TRNA-CYS 15
SNOSNR60_Z15 18 SNOR109 15 TRNA-TYR 12
PLANT_U3 18 SNOZ112 15 5.8S_RRNA 9
SNOR137 18 U5 14 SNOR109 9
SNOZ112 15 MIR171_1 13 MIR171_1 9
U6 15 MIR159 12 MIR169_5 8
SNOR44_J54 14 PLANT_U3 11 MIR159 8
MIR159 12 SNOU49 10 SNOR44_J54 6
U1 12 U6 9 SNOR128 6
SNOZ267 11 SNOU19 9 MIR169_2 6
SNOU19 10 SNOZ267 8 SNOR99 6
U3 10 SNORD18 8 SNORD18 5
SNOR69Y 9 SNOF1_F2 8 SNOR126 5
SNOR109 9 TRNA-SER 8 SNOR135 4
SNOR74 9 PLANT_SRP 7 SNORD36 4
METAZOA_SRP 8 SNOR128 7 MIR-172 4
PLANT_SRP 8 MIR169_5 7 SNOR74 4
SNOF1_F2 6 ENOD40 7 MIR-166 4
SNOU49 6 SNOR137 7 SNORD14 4
SNORD14 6 MIR396 6 MIR-598 3
SNOR104 5 MIR-166 6 SNOZ267 3
MIR396 5 SNOR135 5 SNOZ161_228 3
SNOR97 4 SNOR104 5 SNOR11 3
U6ATAC 4 SNOR44_J54 4 MIR-395 3
SNOU30 4 METAZOA_SRP 4 MIR168 3
MIR169_5 4 SNOU30 4 ACEA_U3 3
SNOR103 4 U6ATAC 4 SNOZ196 3
MIR-166 4 MIR169_2 4 SNOZ155 3
MIR-160 3 SNOR126 4 U3 2
SNORD100 3 SNOZ155 3 MIR-160 2
SNOR30 3 TRNA-LEU 2 PK-G12RRNA 2
TRNA-TYR 3 PK-G12RRNA 2 SNOR66 2
ISRR 3 SNOR66 2 SNOJ33 2
TRNA-LEU 3 SNOR116 2 TRNA-PRO 2
ENOD40 2 SNOR24 2 TRNA-MET 2
SNOR135 2 SNOZ196 2 TRNA-LEU 1
SNOR100 2 SNORD100 2 MIR396 1
SNOZ101 2 SNOR30 2 SNORD96 1
5.8S_RRNA 2 SNOR100 2 SNOR116 1
MIR394 2 SNOR60 2 SNOR24 1
MIR169_2 2 SNORD27 2 SNOZ101 1
SNOR21 2 MIR394 2 SNOR114 1
MIR171_1 1 SNOR143 1 TRNA-SER 1
SNOR143 1 SNOR83 1 SNOR104 1
SNOR27 1 SNOR27 1 SNOR32_R81 1
SNOR60 1 MIR-172 1 SNOU30 1
Total 2567 TRNA-TYR 1 Total 2437
   SNOU36A 1   
   SNORD14 1   
   Total 1632   
  1. The abundance of ncRNA targets was grouped by the family or class of the non-coding RNA target transcripts