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Table 3 PVY-derived vsiRNAs interaction with potato ncRNA transcripts

From: The effects of potato virus Y-derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

S.No

sRNA library

Total targets in potato ncRNA transcripts

No. of unique targeting vsiRNAs

No. of unique target ncRNA transcripts

1

PVY-N

2567

825

563

2

PVY-NTN

1632

870

401

3

PVY-O

2437

694

485

  1. High copy number (>50 copies) virus-derived small interfering RNAs (vsiRNAs) of small RNA (sRNA) libraries of Potato virus Y (PVY) strains, tobacco veinal-necrotic strain (PVY-N), necrosis tuber-necrotic strain (PVY-NTN) and ordinary strain (PVY-O) in potato cv. Russet Burbank, were used as query to predict their cross reacting potential with potato ncRNA transcripts using psRNATarget algorithm under default settings