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Table 3 PVY-derived vsiRNAs interaction with potato ncRNA transcripts

From: The effects of potato virus Y-derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

S.No sRNA library Total targets in potato ncRNA transcripts No. of unique targeting vsiRNAs No. of unique target ncRNA transcripts
1 PVY-N 2567 825 563
2 PVY-NTN 1632 870 401
3 PVY-O 2437 694 485
  1. High copy number (>50 copies) virus-derived small interfering RNAs (vsiRNAs) of small RNA (sRNA) libraries of Potato virus Y (PVY) strains, tobacco veinal-necrotic strain (PVY-N), necrosis tuber-necrotic strain (PVY-NTN) and ordinary strain (PVY-O) in potato cv. Russet Burbank, were used as query to predict their cross reacting potential with potato ncRNA transcripts using psRNATarget algorithm under default settings