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Table 2 PVY-derived vsiRNAs interaction with potato coding transcripts

From: The effects of potato virus Y-derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

S.No sRNA library Total target coding transcripts No. of unique targeting vsiRNAs No. of unique target coding transcripts
1 PVY-N 47,743 5765 18,856
2 PVY-NTN 60,513 7590 22,131
3 PVY-O 41,254 5569 17,509
  1. High copy number (>50 copies) virus-derived small interfering RNAs (vsiRNAs) of small RNA (sRNA) libraries of Potato virus Y (PVY) strains, tobacco veinal necrotic strain (PVY-N), necrosis tuber necrotic strain (PVY-NTN) and ordinary strain (PVY-O) in potato cv. Russet Burbank, were employed as query to predict their cross reacting potential with potato coding transcripts using psRobot algorithm under default settings