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Table 2 PVY-derived vsiRNAs interaction with potato coding transcripts

From: The effects of potato virus Y-derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

S.No

sRNA library

Total target coding transcripts

No. of unique targeting vsiRNAs

No. of unique target coding transcripts

1

PVY-N

47,743

5765

18,856

2

PVY-NTN

60,513

7590

22,131

3

PVY-O

41,254

5569

17,509

  1. High copy number (>50 copies) virus-derived small interfering RNAs (vsiRNAs) of small RNA (sRNA) libraries of Potato virus Y (PVY) strains, tobacco veinal necrotic strain (PVY-N), necrosis tuber necrotic strain (PVY-NTN) and ordinary strain (PVY-O) in potato cv. Russet Burbank, were employed as query to predict their cross reacting potential with potato coding transcripts using psRobot algorithm under default settings
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Virology Journal

ISSN: 1743-422X