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Table 1 Cassava brown streak isolates used in this study

From: Variability in P1 gene redefines phylogenetic relationships among cassava brown streak viruses

Isolate name Location Symptoms Year collected Country Accession number Reference
TZ_Chamb_1_13 Chambezi CBSD-like 2013 Tanzania KY290016 This study
TZ_Chamb_2_13 Chambezi CBSD-like 2013 Tanzania KY290017 This study
TZ_Chamb_3_13 Chambezi CBSD-like 2013 Tanzania KY290018 This study
TZ_Chamb_4_13 Chambezi CBSD-like 2013 Tanzania KY290019 This study
TZ_Chamb_5_13 Chambezi CBSD-like 2013 Tanzania KY290010 This study
TZ_Chamb_6_13 Chambezi CBSD-like 2013 Tanzania KY290011 This study
TZ_Chamb_7_13 Chambezi CBSD-like 2013 Tanzania KY290020 This study
TZ_Chamb_8_13 Chambezi CBSD-like 2013 Tanzania KY290012 This study
TZ_Chamb_9_13 Chambezi CBSD-like 2013 Tanzania KY290013 This study
TZ_Chamb_10_13 Chambezi CBSD-like 2013 Tanzania KY290014 This study
TZ_Chamb_11_13 Chambezi CBSD-like 2013 Tanzania KY290015 This study
TZ_Chamb_12_13 Chambezi CBSD-like 2013 Tanzania KY290021 This study
TZ_Chamb_13_13 Chambezi CBSD-like 2013 Tanzania KY290022 This study
TZ_Chamb_14_13 Chambezi CBSD-like 2013 Tanzania KY290023 This study
TZ_Unguja_1_13 Unguja CBSD-like 2013 Tanzania KY290024 This study
TZ_Mari_1_13 MARI CBSD-like 2013 Tanzania KY290025 This study
MW07 Karonga CBSD-like 2013 Malawi KY290003 This study
MW08 Karonga CBSD-like 2013 Malawi KY290004 This study
MW12 Karonga CBSD-like 2013 Malawi KY289996 This study
MW13 Karonga CBSD-like 2013 Malawi KY290006 This study
MW14 Rumphi CBSD-like 2013 Malawi KY289999 This study
MW15 Karonga CBSD-like 2013 Malawi KY289998 This study
MW16 NkhataBay CBSD-like 2013 Malawi KY289995 This study
MW22 Karonga CBSD-like 2013 Malawi KY290001 This study
MW23 Karonga CBSD-like 2013 Malawi KY290000 This study
MW37 NkhataBay CBSD + CMD 2013 Malawi KY290008 This study
MW40 Nkhotakota CBSD-like 2013 Malawi KY290002 This study
MW42 Karonga CBSD-like 2013 Malawi KY290005 This study
MW43 NkhataBay CBSD-like 2013 Malawi KY290007 This study
MW46 Lilongwe CBSD + CMD 2013 Malawi KY289997 This study
MW50 NkhataBay CBSD-like 2013 Malawi KY290009 This study
TZ-Nal:07 Naliendele 2007 Tanzania HG965221 Bayene et al., unpublished
TZ:Kor6:08 Unknown 2008 Tanzania GU563327 Mbanzibwa et al., 2011 [33]
TanZ Kiabakari, Musoma 2008 Tanzania GQ329864 Monger et al., 2010 [34]
Tan70 Mlandizi 2009 Tanzania FN434437 Winter et al., 2010 [5]
MLB3 Muleba 2008 Tanzania FJ039520 Mbanziwa et al., 2011 [33]
CBSV-Ug Unknown 2006 Uganda FJ185044 Monger et al., 2010 [34]
Mo_83 Namacurra 2009 Mozambique FN434436 Winter et al., 2010 [5]
Ke_125 Kilifi 1999 Kenya FN433930 Winter et al., 2010 [5]
Ke_54 Kilifi 1999 Kenya FN433931 Winter et al., 2010 [5]
UGKab07 Kabanyolo 2007 Uganda HG965222 Bayene, et al., unpublished
Ma_42 Chitedze 2007 Malawi FN433932 Winter et al., 2010 [5]
Ma_43 Salima 2007 Malawi FN433933 Winter et al., 2010 [5]
TZ:Ser 5 Serengeti 2013 Tanzania KR108838 Ndunguru et al., 2015 [9]
UCBSV_TZ:Ser 6 Serengeti 2013 Tanzania KR108837 Ndunguru et al., 2015 [9]
CBSV_TZ:Ser 6 Serengeti 2013 Tanzania KR108830 Ndunguru et al., 2015 [9]
TZ-Tan 19-1 Tanga 2013 Tanzania KR108834 Ndunguru et al., 2015 [9]
TZ-Tan 19-2 Tanga 2013 Tanzania KR108832 Ndunguru et al., 2015 [9]
TZ-Tan 23 Tanga 2013 Tanzania KR108839 Ndunguru et al., 2015 [9]
TZ-Tan 26 Tanga 2013 Tanzania KR108833 Ndunguru et al., 2015 [9]
TZ-Nya 36 Nyasa 2013 Tanzania KR108831 Ndunguru et al., 2015 [9]
TZ-Nya 38 Nyasa 2013 Tanzania KR108829 Ndunguru et al., 2015 [9]
TZ-Mf-49 Mafia 2013 Tanzania KR108828 Ndunguru et al., 2015 [9]
TZ-Maf-51 Mafia 2013 Tanzania KR108836 Ndunguru et al., 2015 [9]
TZ-Maf-58 Mafia 2013 Tanzania KR108835 Ndunguru et al., 2015 [9]
F21S4_S11_N Unknown 2013 Kenya KR911736 Kathurima et al., 2016 [32]
F25S6_S10_N Unknown 2013 Kenya KR911725 Kathurima et al., 2016 [32]
F3S1_S23_C Unknown 2013 Kenya KR911727 Kathurima et al., 2016 [32]
F16S4_S7_W Unknown 2013 Kenya KR911723 Kathurima et al., 2016 [32]
F18S1_S3_W Unknown 2013 Kenya KR911726 Kathurima et al., 2016 [32]
F10S2_S20_C Unknown 2013 Kenya KR911722 Kathurima et al., 2016 [32]
F9S2_S21_C Unknown 2013 Kenya KR911721 Kathurima et al., 2016 [32]
F17S3_S2 Unknown 2013 Kenya KR911724 Kathurima et al., 2016 [32]
F19SS2_S4_W Unknown 2013 Kenya KR911729 Kathurima et al.,2016 [32]