Table 1 Cassava brown streak isolates used in this study
From: Variability in P1 gene redefines phylogenetic relationships among cassava brown streak viruses
Isolate name | Location | Symptoms | Year collected | Country | Accession number | Reference |
|---|---|---|---|---|---|---|
TZ_Chamb_1_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290016 | This study |
TZ_Chamb_2_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290017 | This study |
TZ_Chamb_3_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290018 | This study |
TZ_Chamb_4_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290019 | This study |
TZ_Chamb_5_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290010 | This study |
TZ_Chamb_6_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290011 | This study |
TZ_Chamb_7_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290020 | This study |
TZ_Chamb_8_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290012 | This study |
TZ_Chamb_9_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290013 | This study |
TZ_Chamb_10_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290014 | This study |
TZ_Chamb_11_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290015 | This study |
TZ_Chamb_12_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290021 | This study |
TZ_Chamb_13_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290022 | This study |
TZ_Chamb_14_13 | Chambezi | CBSD-like | 2013 | Tanzania | KY290023 | This study |
TZ_Unguja_1_13 | Unguja | CBSD-like | 2013 | Tanzania | KY290024 | This study |
TZ_Mari_1_13 | MARI | CBSD-like | 2013 | Tanzania | KY290025 | This study |
MW07 | Karonga | CBSD-like | 2013 | Malawi | KY290003 | This study |
MW08 | Karonga | CBSD-like | 2013 | Malawi | KY290004 | This study |
MW12 | Karonga | CBSD-like | 2013 | Malawi | KY289996 | This study |
MW13 | Karonga | CBSD-like | 2013 | Malawi | KY290006 | This study |
MW14 | Rumphi | CBSD-like | 2013 | Malawi | KY289999 | This study |
MW15 | Karonga | CBSD-like | 2013 | Malawi | KY289998 | This study |
MW16 | NkhataBay | CBSD-like | 2013 | Malawi | KY289995 | This study |
MW22 | Karonga | CBSD-like | 2013 | Malawi | KY290001 | This study |
MW23 | Karonga | CBSD-like | 2013 | Malawi | KY290000 | This study |
MW37 | NkhataBay | CBSD + CMD | 2013 | Malawi | KY290008 | This study |
MW40 | Nkhotakota | CBSD-like | 2013 | Malawi | KY290002 | This study |
MW42 | Karonga | CBSD-like | 2013 | Malawi | KY290005 | This study |
MW43 | NkhataBay | CBSD-like | 2013 | Malawi | KY290007 | This study |
MW46 | Lilongwe | CBSD + CMD | 2013 | Malawi | KY289997 | This study |
MW50 | NkhataBay | CBSD-like | 2013 | Malawi | KY290009 | This study |
TZ-Nal:07 | Naliendele | – | 2007 | Tanzania | HG965221 | Bayene et al., unpublished |
TZ:Kor6:08 | Unknown | – | 2008 | Tanzania | GU563327 | Mbanzibwa et al., 2011 [33] |
TanZ | Kiabakari, Musoma | – | 2008 | Tanzania | GQ329864 | Monger et al., 2010 [34] |
Tan70 | Mlandizi | – | 2009 | Tanzania | FN434437 | Winter et al., 2010 [5] |
MLB3 | Muleba | – | 2008 | Tanzania | FJ039520 | Mbanziwa et al., 2011 [33] |
CBSV-Ug | Unknown | – | 2006 | Uganda | FJ185044 | Monger et al., 2010 [34] |
Mo_83 | Namacurra | – | 2009 | Mozambique | FN434436 | Winter et al., 2010 [5] |
Ke_125 | Kilifi | – | 1999 | Kenya | FN433930 | Winter et al., 2010 [5] |
Ke_54 | Kilifi | – | 1999 | Kenya | FN433931 | Winter et al., 2010 [5] |
UGKab07 | Kabanyolo | – | 2007 | Uganda | HG965222 | Bayene, et al., unpublished |
Ma_42 | Chitedze | – | 2007 | Malawi | FN433932 | Winter et al., 2010 [5] |
Ma_43 | Salima | – | 2007 | Malawi | FN433933 | Winter et al., 2010 [5] |
TZ:Ser 5 | Serengeti | – | 2013 | Tanzania | KR108838 | Ndunguru et al., 2015 [9] |
UCBSV_TZ:Ser 6 | Serengeti | – | 2013 | Tanzania | KR108837 | Ndunguru et al., 2015 [9] |
CBSV_TZ:Ser 6 | Serengeti | – | 2013 | Tanzania | KR108830 | Ndunguru et al., 2015 [9] |
TZ-Tan 19-1 | Tanga | – | 2013 | Tanzania | KR108834 | Ndunguru et al., 2015 [9] |
TZ-Tan 19-2 | Tanga | – | 2013 | Tanzania | KR108832 | Ndunguru et al., 2015 [9] |
TZ-Tan 23 | Tanga | – | 2013 | Tanzania | KR108839 | Ndunguru et al., 2015 [9] |
TZ-Tan 26 | Tanga | – | 2013 | Tanzania | KR108833 | Ndunguru et al., 2015 [9] |
TZ-Nya 36 | Nyasa | – | 2013 | Tanzania | KR108831 | Ndunguru et al., 2015 [9] |
TZ-Nya 38 | Nyasa | – | 2013 | Tanzania | KR108829 | Ndunguru et al., 2015 [9] |
TZ-Mf-49 | Mafia | – | 2013 | Tanzania | KR108828 | Ndunguru et al., 2015 [9] |
TZ-Maf-51 | Mafia | – | 2013 | Tanzania | KR108836 | Ndunguru et al., 2015 [9] |
TZ-Maf-58 | Mafia | – | 2013 | Tanzania | KR108835 | Ndunguru et al., 2015 [9] |
F21S4_S11_N | Unknown | – | 2013 | Kenya | KR911736 | Kathurima et al., 2016 [32] |
F25S6_S10_N | Unknown | – | 2013 | Kenya | KR911725 | Kathurima et al., 2016 [32] |
F3S1_S23_C | Unknown | – | 2013 | Kenya | KR911727 | Kathurima et al., 2016 [32] |
F16S4_S7_W | Unknown | – | 2013 | Kenya | KR911723 | Kathurima et al., 2016 [32] |
F18S1_S3_W | Unknown | – | 2013 | Kenya | KR911726 | Kathurima et al., 2016 [32] |
F10S2_S20_C | Unknown | – | 2013 | Kenya | KR911722 | Kathurima et al., 2016 [32] |
F9S2_S21_C | Unknown | – | 2013 | Kenya | KR911721 | Kathurima et al., 2016 [32] |
F17S3_S2 | Unknown | – | 2013 | Kenya | KR911724 | Kathurima et al., 2016 [32] |
F19SS2_S4_W | Unknown | – | 2013 | Kenya | KR911729 | Kathurima et al.,2016 [32] |