Skip to main content

Advertisement

Table 2 Similarity between expressed sequence tags in the forward suppression subtractive hybridization library and genes in GenBank

From: Cyclophilin B facilitates the replication of Orf virus

EST No. Species Gene homology Gene name Fold upregulation
F-1 Bos Taurus Bos taurus beta-actin (ACTB) mRNA ACTB 1.5
F-2 Bos Taurus Bos taurus actin, gamma 1 (ACTG1), mRNA ACTG1 1.7
F-3 unknown unknown unknown 3.4
F-4 Bos Taurus Bos taurus vacuole membrane protein 1 (VMP1), mRNA VMP1 3.7
F-5 Bos Taurus Bos taurus ring finger protein 19B (RNF19B), mRNA RNF19B 1.9
F-6 Bos Taurus Bos taurus zinc finger protein 408 (ZNF408), mRNA ZNF408 2.3
F-7 Bos Taurus Bos taurus zinc finger CCCH-type containing 14 (ZC3H14), transcript variant 1, mRNA ZC3H14 1.5
F-8 Bos Taurus Bos taurus ATPase, Na+/K+ transporting, beta 1 polypeptide (ATP1B1), mRNA. ATP1B1 3.4
F-9 Bos Taurus Bos taurus poly-U binding splicing factor 60KDa (PUF60), mRNA. PUF60 2.3
F-10 unknown unknown unknown 2.6
F-11 Bos Taurus Bos taurus eukaryotic translation initiation factor 3, subunit L (EIF3L), mRNA EIF3L 3.7
F-12 Bos Taurus Bos taurus eukaryotic translation elongation factor 1 alpha 1 EEF1A1), mRNA EEF1A1 3.4
F-13 Bos Taurus Bos taurus eukaryotic translation initiation factor 5 (EIF5), mRNA EIF5 2.9
F-14 Bos Taurus Bos taurus cytohesin 2 (CYTH2), mRNA CYTH2 1.6
F-15 Bos Taurus Bos taurus transmembrane emp24 protein transport domain containing 1 (TMED1), mRNA TMED1 3.6
F-16 Bos Taurus Bos taurus transmembrane protein 179B (TMEM179B), mRNA TMEM179B 2.8
F-17 Bos Taurus Bos taurus neuropilin 2 (NRP2), mRNA NRP2 2.1
F-18 Bos Taurus Sin3A-associated protein, 18 kDa (SAP18), mRNA SAP18 2.4
F-19 Bos Taurus Bos taurus renin binding protein (RENBP), mRNA RENBP 1.3
F-20 Bos Taurus Bos taurus signal sequence receptor, alpha (SSR1), mRNA SSR1 1.9
F-21 Bos Taurus Bos taurus mitogen-activated protein kinase kinase 6 (MAP2K6), mRNA MAP2K6/MKK6 9.2
F-22 Bos Taurus Bos Taurus solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 (SLC1A1), mRNA. SLC1A1 2.7
F-23 Bos Taurus Bos taurus isolate Mcg489 mitochondrion, complete genome Mcg489 mitochondrion 2.5
F-24 Bos Taurus Calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA CALM1 2.3
F-25 Bos Taurus Bos taurus enhancer of rudimentary homolog (Drosophila) (ERH), mRNA ERH 1.7
F-26 Bos Taurus Bos taurus threonyl-tRNA synthetase-like 1 (TARSL1), mRNA, complete cds. TARSL1 2.1
F-27 Bos Taurus Bos taurus threonyl-tRNA synthetase 2, mitochondrial (putative) (TARS2), mRNA TARS2 1.8
F-28 Bos Taurus Bos taurus S100 calcium binding protein A2 (S100A2), mRNA S100A2 9.7
F-29 Bos Taurus Bos taurus lactate dehydrogenase B (LDHB), mRNA, complete cds. LDHB 3.5
F-30 Bos Taurus Bos taurus H3 histone, family 3A (H3F3A), mRNA. H3F3A 4.2
F-31 Bos Taurus Bos taurus heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRNPU), mRNA. HNRNPU 2.9
F-32 Bos Taurus Bos taurus RAB2A, member RAS oncogene family (RAB2A), mRNA. RAB2A 1.5
F-33 Bos Taurus Bos taurus alanyl-tRNA synthetase (AARS), mRNA AARS 1.9
F-34 Bos Taurus Bos taurus minichromosome maintenance complex component 4 (MCM4), mRNA MCM4 2.7
F-35 Bos Taurus Bos taurus tubulin, beta 6, mRNA TUBB6 1.3
F-36 Bos Taurus Bos taurus tubulin, alpha 1c (TUBA1C), mRNA TUBA1C 1.7
F-37 Bos Taurus Bos taurus tubulin, alpha 1b (TUBA1B), mRNA TUBA1B 1.2
F-38 Bos Taurus Bos taurus tropomyosin 1 (alpha) (TPM1), mRNA TPM1 2.0
F-39 Bos Taurus Bos taurus tropomyosin 4 (TPM4), mRNA TPM4 1.5
F-40 Bos Taurus Bos taurus minichromosome maintenance complex component 6 (MCM6), mRNA MCM6 2.3
F-41 Bos Taurus Bos taurus chromosome 10 open reading frame, human C14orf1 (C10H14orf1), mRNA. C10H14orf1 2.4
F-42 Bos Taurus Bos taurus CLPTM1-like (CLPTM1L), mRNA CLPTM1L 4.3
F-43 Bos Taurus Bos taurus CD151 molecule (Raph blood group) (CD151), mRNA CD151 7.6
F-44 Bos Taurus Bos taurus ubiquinol-cytochrome c reductase binding protein (UQCRB), mRNA. UQCRB 2.6
F-45 Bos Taurus Bos taurus low molecular mass ubiquinone-binding protein mRNA, complete cds. Low molecular mass ubiquinone-binding protein 2.1
F-46 Bos Taurus Bos taurus dynein, cytoplasmic 1, light intermediate chain 1 (DYNC1LI1), mRNA DYNC1LI1 3.5
F-47 Bos Taurus Bos taurus glucose-6-phosphate isomerase (GPI), mRNA GPI 2.9
F-48 Bos Taurus Bos taurus galactosidase, beta 1 (GLB1), mRNA GLB1 2.4
F-49 Bos Taurus Bos taurus proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) (PSME1), mRNA. PSME1 1.3
F-50 Bos Taurus Bos taurus peptidylprolyl isomerase B (cyclophilin B) (PPIB), mRNA PPIB 10.2
F-51 Bos Taurus Bos taurus peroxiredoxin 2 (PRDX2), mRNA. PRDX2 3.4
F-52 Bos Taurus Bos taurus proteolipid protein 2 (colonic epithelium-enriched) (PLP2), mRNA. PLP2 3.7
F-53 Bos Taurus Bos taurus voucher proven bull 27,223 mitochondrion, complete genome. Bos taurus voucher proven bull 27,223 mitochondrion 2.1
F-54 Bos Taurus Bos taurus Fas-activated serine/threonine kinase (FASTK), mRNA. FASTK 4.6
F-55 Bos Taurus Bos taurus ferritin, light polypeptide (FTL), mRNA FTL 2.5
F-56 Bos Taurus Bos taurus Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU), mRNA. FAU 1.2
F-57 Bos Taurus Bos taurus acyl-CoA thioesterase 7 (ACOT7), mRNA ACOT7 1.9
F-58 Bos Taurus Bos taurus adenine phosphoribosyltransferase (APRT), mRNA APRT 1.5
F-59 Bos Taurus Bos taurus mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), mRNA, complete cds MGAT1 1.7
F-60 Bos Taurus Bos taurus lactate dehydrogenase C (LDHC), transcript variant 1, mRNA. LDHC 2.3