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Table 3 Key variable sites between the clade SEA-1, clade SEA-2, and clade SEA-3 viruses, Yunnan Province

From: Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China

 

Amino acid position in the N protein

Clade

42

90b,c

110

128b,c

135b,c

157

254

375b,a

379b,c,a

397

426b,c

SEA-1

S

T

E

L

S

N

R

T

L

S

S

SEA-2

T

N

D

L

S

S

K

T

L

G

S

SEA-3

T

T

E

V

A

N

R

M

V

G

A

  1. aLinear epitope (antigenic site IV)
  2. bPositively selected sites were identified with Bayes empirical Bayes (BEB) analyses in CODEML
  3. cPositively selected sites that were identified with fixed-effect likelihood (FEL) method implemented in HYPHY
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Virology Journal

ISSN: 1743-422X