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Table 3 Key variable sites between the clade SEA-1, clade SEA-2, and clade SEA-3 viruses, Yunnan Province

From: Cross-border spread, lineage displacement and evolutionary rate estimation of rabies virus in Yunnan Province, China

  Amino acid position in the N protein
Clade 42 90b,c 110 128b,c 135b,c 157 254 375b,a 379b,c,a 397 426b,c
SEA-1 S T E L S N R T L S S
SEA-2 T N D L S S K T L G S
SEA-3 T T E V A N R M V G A
  1. aLinear epitope (antigenic site IV)
  2. bPositively selected sites were identified with Bayes empirical Bayes (BEB) analyses in CODEML
  3. cPositively selected sites that were identified with fixed-effect likelihood (FEL) method implemented in HYPHY