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Table 4 Percentage identity matrices (nucleotide and deduced amino acid) of VP4 gene

From: First study conducted in Northern India that identifies group C rotavirus as the etiological agent of severe diarrhea in children in Delhi

Strains

Human

Porcine

Bovine

Human/India

Study Samples

 

Bristol

BCN9

OH567

Wu82

BS347

CAU 10–312

Cowden

Shintoku

V460

V508

ND-061

ND-240

ND-237

Bristol

 

97.00%

97.00%

97.60%

96.10%

96.50%

69.20%

65.20%

96.60%

97.00%

98.40%

99.90%

98.40%

BCN9

91.90%

 

97.80%

98.50%

97.80%

97.40%

68.80%

64.40%

98.30%

98.70%

97.90%

98.20%

97.90%

OH567

91.90%

94.60%

 

99.30%

97.00%

97.00%

69.00%

65.00%

97.40%

98.20%

98.20%

98.40%

98.20%

Wu82

93.20%

95.90%

98.60%

 

97.60%

97.60%

69.20%

65.00%

98.00%

98.50%

97.70%

98.90%

97.70%

BS347

89.90%

93.90%

92.60%

93.90%

 

97.40%

68.80%

64.40%

97.80%

97.80%

97.10%

98.40%

97.10%

CAU 10–312

91.20%

92.60%

92.60%

93.90%

93.20%

 

69.20%

65.20%

97.80%

97.40%

98.70%

99.50%

98.70%

Cowden

69.70%

69.10%

69.70%

69.70%

67.20%

60.30%

 

75.70%

69.00%

69.20%

66.80%

67.80%

66.80%

Shintoku

69.00%

67.80%

69.00%

69.00%

67.80%

69.60%

77.30%

 

64.60%

64.80%

63.20%

63.60%

63.20%

V460

90.60%

94.60%

93.30%

94.60%

94.00%

94.00%

69.10%

67.80%

 

98.30%

97.30%

98.00%

97.30%

V508

92.60%

96.60%

95.30%

96.60%

94.60%

93.20%

69.10%

67.80%

95.30%

 

98.10%

97.40%

98.10%

ND-061

92.50%

95.90%

94.50%

95.90%

95.90%

98.20%

68.10%

66.80%

97.30%

96.50%

 

97.20%

100.00%

ND-240

93.80%

97.20%

95.90%

97.20%

97.20%

97.60%

68.70%

67.40%

96.30%

97.90%

99.50%

 

98.20%

ND-237

92.50%

95.90%

94.50%

95.90%

95.90%

98.20%

68.10%

66.80%

97.30%

96.50%

100.00%

99.50%

 
  1. Identity matrices nucleotide (above the diagonal) and deduced amino acid (below the diagonal) among human, porcine and bovine group C rotaviruses. References strains from different geographical locations are used for the analysis