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Table 4 Percentage identity matrices (nucleotide and deduced amino acid) of VP4 gene

From: First study conducted in Northern India that identifies group C rotavirus as the etiological agent of severe diarrhea in children in Delhi

Strains Human Porcine Bovine Human/India Study Samples
  Bristol BCN9 OH567 Wu82 BS347 CAU 10–312 Cowden Shintoku V460 V508 ND-061 ND-240 ND-237
Bristol   97.00% 97.00% 97.60% 96.10% 96.50% 69.20% 65.20% 96.60% 97.00% 98.40% 99.90% 98.40%
BCN9 91.90%   97.80% 98.50% 97.80% 97.40% 68.80% 64.40% 98.30% 98.70% 97.90% 98.20% 97.90%
OH567 91.90% 94.60%   99.30% 97.00% 97.00% 69.00% 65.00% 97.40% 98.20% 98.20% 98.40% 98.20%
Wu82 93.20% 95.90% 98.60%   97.60% 97.60% 69.20% 65.00% 98.00% 98.50% 97.70% 98.90% 97.70%
BS347 89.90% 93.90% 92.60% 93.90%   97.40% 68.80% 64.40% 97.80% 97.80% 97.10% 98.40% 97.10%
CAU 10–312 91.20% 92.60% 92.60% 93.90% 93.20%   69.20% 65.20% 97.80% 97.40% 98.70% 99.50% 98.70%
Cowden 69.70% 69.10% 69.70% 69.70% 67.20% 60.30%   75.70% 69.00% 69.20% 66.80% 67.80% 66.80%
Shintoku 69.00% 67.80% 69.00% 69.00% 67.80% 69.60% 77.30%   64.60% 64.80% 63.20% 63.60% 63.20%
V460 90.60% 94.60% 93.30% 94.60% 94.00% 94.00% 69.10% 67.80%   98.30% 97.30% 98.00% 97.30%
V508 92.60% 96.60% 95.30% 96.60% 94.60% 93.20% 69.10% 67.80% 95.30%   98.10% 97.40% 98.10%
ND-061 92.50% 95.90% 94.50% 95.90% 95.90% 98.20% 68.10% 66.80% 97.30% 96.50%   97.20% 100.00%
ND-240 93.80% 97.20% 95.90% 97.20% 97.20% 97.60% 68.70% 67.40% 96.30% 97.90% 99.50%   98.20%
ND-237 92.50% 95.90% 94.50% 95.90% 95.90% 98.20% 68.10% 66.80% 97.30% 96.50% 100.00% 99.50%  
  1. Identity matrices nucleotide (above the diagonal) and deduced amino acid (below the diagonal) among human, porcine and bovine group C rotaviruses. References strains from different geographical locations are used for the analysis
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Virology Journal

ISSN: 1743-422X