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Table 3 Locations of predicted ORFs in the genome of AcCoV-JC34

From: Detection of alpha- and betacoronaviruses in rodents from Yunnan, China

ORF Location (nt) Length (nt/aa) TRS location TRS sequence(s) (distance to AUG)
1ab 437–20376 (shift at 12361) 19940/6645 181 CAACTCAACUAAACG(247)ATG
S 20376–23756 3381/1126 20306 TGGTAAACUUATTGTTAG(64)ATG
3 23753–24397 645/214 23711 TGTTGUACUAAACCT(36)ATG
E 24397–24633 237/78 24392 CCACTTAACUA A TG
M 24643–25389 747/248 24636 TTGATCAACUAAAATG
6 25401–25901 501/166 25389 GGTCTAAACUAAACCATTATG
N 25903–27072 1170/389 25896 AATTTCAACUAAAATG
8 26530–27702 543/180 26484 TAGATCGCACUAA(40)ATG
9 27074/27391 318/105 27060 TGATGAAACUAACGCCTAAAATG
  1. Start codons are underlined. The conserved (AACUAA) or variant (AACUUA, UACUAA, CACUAA) TRS core sequences are highlighted in bold