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Table 1 List of primer sequences use for first and second round PCR for each og the three HPV genotypes

From: Unique LCR variations among lineages of HPV16, 18 and 45 isolates from women with normal cervical cytology in Ghana

HPV genotype

First round PCR primers

Second round PCR primers

HPV16

HPV16R1F (5’CACCTACTAATTGTGTTGTGG3’)

HPV16R2F (5’GGGGTACCTCGGTTGCATGCTTTTTGGC3’)

HPV16R1R (5’GTTTGCACACACCCATG3’)

HPV16R2R (5’GGTCTAGACGGTTTGCACACACCCATGT3’

HPV18

HPV18R1F (5’GTGTTTGTGGTATGGGTGTT3’)

HPV18R2F (5’CGGTTGCATAAACTATGTAT3’)

HPV18R1R (5’GTATAGTATGTGCTGCCCAA3’)

HPV18R2R (5’TCGGTTGCCTTTGGCTTATG3’),

HPV45 (fragment 1)

HPV45F (5’GACCTCGTAAGCGTCCTGC3’)

HPV45F (5’GACCTCGTAAGCGTCCTGC3’)

HPV45R (5’GGATGCTGTGTAGTATG CAAGTTTATA3’)

HPV45R (5’GGATGCTGTGTAGTATG CAAGTTTATA3’);

HPV45 (fragment 2)

HPV45F2 (5’GTATGGTGTTACTGTACATA ATTGTGG3’)

HPV45F2 (5’GTATGGTGTTACTGTACATA ATTGTGG3’)

HPV45R2 (5’CATAGGGTGTGGATACAGTTGTG3’)

HPV45R2 (5’CATAGGGTGTGGATACAGTTGTG3’)

HPV45 (fragment 3)

HPV45F3 5’CTGGCACATTTACAACCCCTAC3’)

HPV45F3 (5’CTGGCACATTTACAACCCCTAC3’)

HPV45R3 (5’CGCCATCCTGCAATGCAC 3’)

HPV45R3 (5’CGCCATCCTGCAATGCAC 3’)